当前解析结果
SmilChr01G001639| 统一新 Gene ID | SmilChr01G001639 |
|---|---|
| 名称 | SmilChr01G001639 |
| 描述 | IQ domain-containing protein IQM3-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 30420018 - 30422294 / - |
| NCBI Gene ID | LOC131019523 |
|---|---|
| GeneID | 131019523 |
| locus_tag | - |
| NCBI Name | LOC131019523 |
| 原始查询 | LOC131019523 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | IQ domain-containing protein IQM3-like |
| 产物 | IQ domain-containing protein IQM3-like |
| Arabidopsis | AT3G52870 (AT3G52870)IQ calmodulin-binding motif family protein [Source:NCBI gene (formerly Entrezgene);Acc:824453] identity=64.3; qcov=0.94; evalue=4.64e-134; confidence=high |
| Rice | Os12g0149900- identity=64.9; qcov=0.87; evalue=5.88e-131; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00612 (IQ); PF30383 (IQM_M) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019523 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057804055.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057804055.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057804055.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804055.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804055.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:30420733 |
AT |
A |
1bp_deletion | frameshift_variant | 60 | A1,A10,A13,A2,A24,A7,A9,B101,B102,B104,B105,B118,B121,B125,B128,B130,B132,B138,B140,B16,B17,B18,B22,B27,B3,B36,B37,B4,B56,B58,B6,B60,B61,B65,B8,B81,B82,B90,B92,B96,C12,C13,C18,C24,C25,C3,C4,C51,C59,C67,C71,C77,C81,C82,D1,D10,D2,D3,D4,D6 |
Chr1:30420750 |
G |
A |
EMS_canonical_SNV | stop_gained | 16 | A25,A9,B106,B126,B29,B5,B52,B57,B73,B78,B98,C15,C16,C36,C43,D9 |
Chr1:30420753 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | A15 |
Chr1:30420753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr1:30420885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr1:30420892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C36 |
Chr1:30420934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr1:30421100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr1:30421341 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:30421362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B32,C57,C75 |
Chr1:30421504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B82,C7 |
Chr1:30421512 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B78,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804055.1PF00612
IQ 23-42 aa
PF30383
IQM_M 174-268 aa
XP_057804062.1PF00612
IQ 23-42 aa
PF30383
IQM_M 174-268 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804055.1 |
Pfam | PF00612 |
IQ | Motif | 23 | 42 | 0.00031 | 21.0 | IQ calmodulin-binding motif |
XP_057804055.1 |
Pfam | PF30383 |
IQM_M | Domain | 174 | 268 | 1.2e-40 | 138.3 | IQ motif-containing protein middle domain |
XP_057804062.1 |
Pfam | PF00612 |
IQ | Motif | 23 | 42 | 0.00028 | 21.1 | IQ calmodulin-binding motif |
XP_057804062.1 |
Pfam | PF30383 |
IQM_M | Domain | 174 | 268 | 1.1e-40 | 138.3 | IQ motif-containing protein middle domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。