Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001521`

染色体: Chr04 坐标: 25121663-25125648 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001521`
名称	SmilChr04G001521
描述	uncharacterized SmilChr04G001521
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	25121663 - 25125648 / `-`

ID 对照

NCBI Gene ID	`LOC131019544`
GeneID	`131019544`
locus_tag	`-`
NCBI Name	`LOC131019544`
原始查询	`LOC131019544`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:824730]; symbol=AT3G55640; hit=AT3G55640; species=arabidopsis; confidence=high
产物	Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:824730]; symbol=AT3G55640; hit=AT3G55640; species=arabidopsis; confidence=high
Arabidopsis	`AT3G55640` (AT3G55640) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:824730] identity=66; qcov=0.969; evalue=1.65e-118; confidence=high
Rice	`Os03g0267700` - identity=72.7; qcov=0.843; evalue=3.94e-114; confidence=high
GO	GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131019544

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057804092.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057804092.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057804092.1`
4	Nucleus	细胞核	0.00000	`XP_057804092.1`
5	Chromosome	染色体	0.00000	`XP_057804092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:25121933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:25124665`	`TA`	`T`	1bp_deletion	frameshift_variant	5	B119,B54,C16,C37,C78
`Chr4:25124665`	`TA`	`T`	1bp_deletion	CDS_variant	5	B119,B54,C16,C37,C78
`Chr4:25124674`	`TA`	`T`	1bp_deletion	frameshift_variant	21	A20,A5,B1,B19,B21,B25,B29,B46,B67,B77,B78,B90,B98,C13,C48,C50,C57,C74,C86,C87,D9
`Chr4:25124711`	`TCA`	`T`	2bp_deletion	frameshift_variant	22	A20,B1,B107,B119,B25,B29,B54,B67,B77,B78,B98,C13,C16,C37,C48,C50,C57,C78,C86,C87,D8,D9
`Chr4:25124736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B23,B54,C37,C78
`Chr4:25124922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:25124984`	`C`	`T`	EMS_canonical_SNV	stop_gained	62	A10,A16,A9,B11,B112,B113,B117,B118,B121,B122,B125,B126,B135,B138,B140,B15,B2,B21,B22,B23,B26,B36,B37,B4,B44,B45,B49,B51,B52,B55,B61,B62,B63,B70,B72,B78,B79,B82,B84,B87,B89,B9,B93,C11,C14,C21,C28,C32,C39,C40,C41,C43,C57,C58,C62,C68,C70,C71,C72,C85,D1,D3
`Chr4:25125023`	`A`	`ATT`	2bp_insertion	frameshift_variant	1	B52
`Chr4:25125023`	`A`	`ATT`	2bp_insertion	CDS_variant	1	B52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804092.1

338 aa

169

338

Mito_carr

PF00153 Mito_carr 40-132 aa PF00153 Mito_carr 151-234 aa PF00153 Mito_carr 243-333 aa

XP_057804093.1

315 aa

158

315

Mito_carr

PF00153 Mito_carr 40-129 aa PF00153 Mito_carr 131-211 aa PF00153 Mito_carr 220-310 aa

XP_057804094.1

261 aa

130

261

Mito_carr

PF00153 Mito_carr 40-132 aa PF00153 Mito_carr 151-234 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804092.1`	Pfam	`PF00153`	Mito_carr	Repeat	40	132	6.4e-74	244.5	Mitochondrial carrier protein
`XP_057804092.1`	Pfam	`PF00153`	Mito_carr	Repeat	151	234	6.4e-74	244.5	Mitochondrial carrier protein
`XP_057804092.1`	Pfam	`PF00153`	Mito_carr	Repeat	243	333	6.4e-74	244.5	Mitochondrial carrier protein
`XP_057804093.1`	Pfam	`PF00153`	Mito_carr	Repeat	40	129	6.7e-72	238.0	Mitochondrial carrier protein
`XP_057804093.1`	Pfam	`PF00153`	Mito_carr	Repeat	131	211	6.7e-72	238.0	Mitochondrial carrier protein
`XP_057804093.1`	Pfam	`PF00153`	Mito_carr	Repeat	220	310	6.7e-72	238.0	Mitochondrial carrier protein
`XP_057804094.1`	Pfam	`PF00153`	Mito_carr	Repeat	40	132	9.4e-48	160.6	Mitochondrial carrier protein
`XP_057804094.1`	Pfam	`PF00153`	Mito_carr	Repeat	151	234	9.4e-48	160.6	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009100328.1
TACAAAGTCGGCGTCGCGCACGTTTTTACCACAGCTTCGTGTTGTTTACGCCAACAGCAATTCATTAATACCATGAGCTGTTTGAACAAACTGCCCCCATAAGCACTTCTCGATTCCCTCTTTTCTCAAGATTGCGTCCTGCCGTTGTATCAATTTCTGTGTTTGGATTTTATTTTATATGTCAGCGATTGGTAAAATGCAGACGGAAGCGAGGGTCGGAGTGGTGGTGGAGGGAGGGGGCCTGAGTGCGACGACGTCGT...

XR_009100327.1
TACAAAGTCGGCGTCGCGCACGTTTTTACCACAGCTTCGTGTTGTTTACGCCAACAGCAATTCATTAATACCATGAGCTGTTTGAACAAACTGCCCCCATAAGCACTTCTCGATTCCCTCTTTTCTCAAGATTGCGTCCTGCCGTTGTATCAATTTCTGTGTTTGGATTTTATTTTATATGTCAGCGATTGGTAAAATGCAGACGGAAGCGAGGGTCGGAGTGGTGGTGGAGGGAGGGGGCCTGAGTGCGACGACGTCGT...

CDS

3 records

下载 CDS FASTA

LOC131019544
ATGTCAGCGATTGGTAAAATGCAGACGGAAGCGAGGGTCGGAGTGGTGGTGGAGGGAGGGGGCCTGAGTGCGACGACGTCGTCGGTCGTGGTGGAGCCGCCGCGCCAGAGGCAAATCGGGACCGCCTCGCAGCTCCTCGCCGGTGGCCTCGCCGGAGCCGTCAGCAAGACTTGTACGGCTCCTCTTGCCCGCCTCACCATTCTTTTTCAGATTCAGGGAATGCATTCCGATGCGTCTAGGTTAGAGAAGGCGAGTATATG...

Protein

3 records

下载 Protein FASTA

XP_057804092.1
MSAIGKMQTEARVGVVVEGGGLSATTSSVVVEPPRQRQIGTASQLLAGGLAGAVSKTCTAPLARLTILFQIQGMHSDASRLEKASIWREASRIAREEGLRAFWKGNLVTIAHRLPYSSISFYAFERYKNLLQVTLGVEGQGENISTDLCIRLLGGGLAGVTAASATYPLDLVRTRLTAQTNVIYYRGIFHSLRTICKEEGFLGLYKGLGPTLLGVGPNLAISFSVYDTARSYWQLHRPQDSIILASLACGSLSGVASSTV...

XP_057804093.1
MSAIGKMQTEARVGVVVEGGGLSATTSSVVVEPPRQRQIGTASQLLAGGLAGAVSKTCTAPLARLTILFQIQGMHSDASRLEKASIWREASRIAREEGLRAFWKGNLVTIAHRLPYSSISFYAFERYKNVGGGLAGVTAASATYPLDLVRTRLTAQTNVIYYRGIFHSLRTICKEEGFLGLYKGLGPTLLGVGPNLAISFSVYDTARSYWQLHRPQDSIILASLACGSLSGVASSTVAYPLDLVRRRMQLEGAGGRARVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器