Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001685`

染色体: Chr04 坐标: 27874855-27881733 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001685`
名称	SmilChr04G001685
描述	uncharacterized SmilChr04G001685
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27874855 - 27881733 / `-`

ID 对照

NCBI Gene ID	`LOC131019550`
GeneID	`131019550`
locus_tag	`-`
NCBI Name	`LOC131019550`
原始查询	`LOC131019550`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842765]; symbol=DUO3; hit=AT1G64570; species=arabidopsis; confidence=medium
产物	Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842765]; symbol=DUO3; hit=AT1G64570; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G64570` (DUO3) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842765] identity=39.4; qcov=0.616; evalue=2.58e-134; confidence=medium
Rice	`-` -
GO	GO:0003712 (transcription coregulator activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131019550

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804098.1`
2	Chromosome	染色体	0.00000	`XP_057804098.1`
3	Centromere	着丝粒	0.00000	`XP_057804098.1`
4	Chromatin	染色质	0.00000	`XP_057804098.1`
5	Telomere	端粒	0.00000	`XP_057804098.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27875100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B55
`Chr4:27875260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr4:27875776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr4:27875907`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B27
`Chr4:27875907`	`TG`	`T`	1bp_deletion	CDS_variant	1	B27
`Chr4:27875961`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C74
`Chr4:27875961`	`AG`	`A`	1bp_deletion	CDS_variant	1	C74
`Chr4:27876002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:27876099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C32,C48,C86
`Chr4:27876227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr4:27876339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,C15,D4
`Chr4:27876577`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948115.1
CCGTCCAAAATCACAGTTTTGTTTTGTTTGTTCTTTCTTTTTTACTTTCCCACTAAAATAAAGAATAGTAGCGTAAAATTAAAATAGGTGAAAAGTGACGGCAAAATGCGAAACGACGACGAAAATCACGGCGATCATGGGCCGACGAAGCAGTAACTGATCGGACGCGGCAGGCGAGTTAGCTATCGCCGCCCCTGAGGATATCCTTTGATCAAAATGTCGGGGTGTTCTACTTCCGCATCCACTGAACTTCAAGACCC...

XM_057948116.1
GTCCAAAATCACAGTTTTGTTTTGTTTGTTCTTTCTTTTTTACTTTCCCACTAAAATAAAGAATAGTAGCGTAAAATTAAAATAGGTGAAAAGTGACGGCAAAATGCGAAACGACGACGAAAATCACGGCGATCATGGGCCGACGAAGCAGTAACTGATCGGACGCGGCAGGCGAGTTAGCTATCGCCGCCCCTGAGGATATCCTTTGATCAAAATGTCGGGGTGTTCTACTTCCGCATCCACTGAACTTCAAGACCCGA...

CDS

2 records

下载 CDS FASTA

LOC131019550
ATGTCGGGGTGTTCTACTTCCGCATCCACTGAACTTCAAGACCCGAATCACCAGGATGCTGTTGTTGATTGCTCCAACTTATCCAAAACCTCTGACCACTGTGCTTTGCAACATGGGAATGAGGTCACTGAAGGGAACAAATTGGAGGATGGTAACCGAAACGTAGATGTGGCTGAGGAAGAAGATGAGGATGAAGATGCGGATTTCAATCCTTTCCTGAAAGAAACTAATTCAATAGAAGCTTCCTCAAGTTTGAGTTC...

Protein

2 records

下载 Protein FASTA

XP_057804098.1
MSGCSTSASTELQDPNHQDAVVDCSNLSKTSDHCALQHGNEVTEGNKLEDGNRNVDVAEEEDEDEDADFNPFLKETNSIEASSSLSSEVEDLDLDVADSRGKHCAPVGNESDEKHRDTGGNVENCDEIVMQTVDSSGKERGKNLDLVYSSTTEKESALVNQSDNGSLFDKENGLASMADIGSATDSRKSMVDIETDGAICMRTRARYSLASFTLDELETFLQETDDEDDLQNVDDEEEYRKFLAAVLRGDCSQNLQENTN...

XP_057804099.1
MSGCSTSASTELQDPNHQDAVVDCSNLSKTSDHCALQHGNEVTEGNKLEDGNRNVDVAEEEDEDEDADFNPFLKETNSIEASSSLSSEVEDLDLDVADSRGKHCAPVGNESDEKHRDTGGNVENCDEIVMQTVDSSGKERGKNLDLVYSSTTEKESALVNQSDNGSLFDKENGLASMADIGSATDSRKSMVDIETDGAICMRTRARYSLASFTLDELETFLQETDDEDDLQNVDDEEEYRKFLAAVLRGDCSQNLQENTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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