当前解析结果
SmilChr04G001692| 统一新 Gene ID | SmilChr04G001692 |
|---|---|
| 名称 | SmilChr04G001692 |
| 描述 | protein argonaute 1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 27958312 - 27965268 / - |
| NCBI Gene ID | LOC131019574 |
|---|---|
| GeneID | 131019574 |
| locus_tag | - |
| NCBI Name | LOC131019574 |
| 原始查询 | LOC131019574 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein argonaute 1 |
| 产物 | protein argonaute 1 |
| Arabidopsis | AT1G48410 (AGO1)Stabilizer of iron transporter SufD / Polynucleotidyl transferase [Source:NCBI gene (formerly Entrezgene);Acc:841262] identity=80.3; qcov=0.894; evalue=0; confidence=high |
| Rice | Os02g0672200 (OsAGO1a)- identity=74.3; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0035194 (regulatory ncRNA-mediated post-transcriptional gene silencing) |
| KEGG | - |
| Pfam | PF02170 (PAZ); PF02171 (Piwi); PF08699 (ArgoL1); PF12764 (Gly-rich_Ago1); PF16486 (ArgoN); PF16487 (ArgoMid); PF16488 (ArgoL2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019574 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057804132.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 1.00000 | XP_057804132.1 |
| 3 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 1.00000 | XP_057804132.1 |
| 4 | Cytosol | 细胞质基质 | 1.00000 | XP_057804132.1 |
| 5 | P-body | P-body | 0.80000 | XP_057804132.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:27958498 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B35 |
Chr4:27958498 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B35 |
Chr4:27958511 |
CT |
C |
1bp_deletion | frameshift_variant | 4 | A24,B35,B58,C32 |
Chr4:27958511 |
CT |
C |
1bp_deletion | CDS_variant | 4 | A24,B35,B58,C32 |
Chr4:27958525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B35,B58,C32 |
Chr4:27958535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B35,B58,C32 |
Chr4:27958586 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B134,B65,B77 |
Chr4:27958606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr4:27958673 |
GC |
G |
1bp_deletion | frameshift_variant | 15 | A14,A18,A24,B103,B131,B24,B35,B58,B59,B75,B91,C3,C32,C60,C76 |
Chr4:27958784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr4:27958881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B103,B58,C14,C76 |
Chr4:27958905 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | A14,B103,B58,B91,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804132.1PF12764
Gly-rich_Ago1 75-186 aa
PF16486
ArgoN 204-339 aa
PF08699
ArgoL1 349-399 aa
PF02170
PAZ 405-531 aa
PF16488
ArgoL2 541-587 aa
PF16487
ArgoMid 598-672 aa
PF02171
Piwi 692-1011 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804132.1 |
Pfam | PF12764 |
Gly-rich_Ago1 | Domain | 75 | 186 | 2.1e-15 | 58.0 | Glycine-rich region of argonaut |
XP_057804132.1 |
Pfam | PF16486 |
ArgoN | Domain | 204 | 339 | 2e-38 | 132.7 | N-terminal domain of argonaute |
XP_057804132.1 |
Pfam | PF08699 |
ArgoL1 | Domain | 349 | 399 | 2e-21 | 76.1 | Argonaute linker 1 domain |
XP_057804132.1 |
Pfam | PF02170 |
PAZ | Domain | 405 | 531 | 1.5e-30 | 106.4 | PAZ domain |
XP_057804132.1 |
Pfam | PF16488 |
ArgoL2 | Family | 541 | 587 | 1.3e-16 | 61.3 | Argonaute linker 2 domain |
XP_057804132.1 |
Pfam | PF16487 |
ArgoMid | Domain | 598 | 672 | 6.2e-10 | 39.9 | Mid domain of argonaute |
XP_057804132.1 |
Pfam | PF02171 |
Piwi | Domain | 692 | 1011 | 7.4e-116 | 387.4 | Piwi domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。