Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001690`

染色体: Chr04 坐标: 27949576-27952921 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001690`
名称	SmilChr04G001690
描述	protein REVEILLE 7-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27949576 - 27952921 / `+`

ID 对照

NCBI Gene ID	`LOC131019577`
GeneID	`131019577`
locus_tag	`-`
NCBI Name	`LOC131019577`
原始查询	`LOC131019577`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein REVEILLE 7-like
产物	protein REVEILLE 7-like
Arabidopsis	`AT5G17300` (RVE1) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831595] identity=48.8; qcov=0.536; evalue=1.72e-47; confidence=medium
Rice	`Os02g0685200` (OsMyb1R) - identity=33.9; qcov=0.996; evalue=2.24e-43; confidence=low
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131019577

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804135.1`
2	Chromosome	染色体	0.00000	`XP_057804135.1`
3	Centromere	着丝粒	0.00000	`XP_057804135.1`
4	Chromatin	染色质	0.00000	`XP_057804135.1`
5	Telomere	端粒	0.00000	`XP_057804135.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27950929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:27951204`	`T`	`TA`	1bp_insertion	frameshift_variant	1	D10
`Chr4:27951204`	`T`	`TA`	1bp_insertion	CDS_variant	1	D10
`Chr4:27951266`	`CT`	`C`	1bp_deletion	frameshift_variant	162	A10,A14,A15,A16,A18,A19,A21,A23,A24,A25,A3,A4,A6,A7,A9,B10,B100,B101,B103,B104,B105,B106,B107,B109,B11,B110,B112,B113,B114,B117,B119,B121,B126,B128,B129,B13,B130,B132,B133,B134,B135,B136,B137,B138,B139,B140,B15,B17,B18,B19,B22,B26,B27,B29,B3,B31,B33,B34,B35,B37,B40,B41,B42,B43,B44,B45,B47,B5,B51,B52,B53,B56,B57,B59,B6,B61,B64,B68,B69,B7,B70,B72,B73,B75,B76,B78,B80,B82,B83,B84,B86,B87,B9,B91,B93,B94,B96,B97,B98,C1,C11,C12,C14,C15,C17,C19,C2,C20,C21,C23,C24,C25,C26,C28,C29,C3,C30,C31,C33,C35,C38,C40,C41,C42,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C59,C60,C61,C64,C65,C66,C67,C69,C74,C75,C77,C78,C80,C81,C83,C86,C9,D1,D10,D11,D2,D4,D5,D6,D9
`Chr4:27951267`	`T`	`TC`	1bp_insertion	frameshift_variant	26	A15,A16,A7,B100,B106,B126,B136,B138,B140,B27,B42,B43,B51,B83,B84,B9,B91,B98,C14,C47,C48,C56,C59,C80,C86,D10
`Chr4:27951270`	`T`	`TA`	1bp_insertion	frameshift_variant	5	B117,B31,B52,C14,C50
`Chr4:27951270`	`T`	`TA`	1bp_insertion	CDS_variant	5	B117,B31,B52,C14,C50
`Chr4:27951757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr4:27951896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:27951945`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A9
`Chr4:27951945`	`AC`	`A`	1bp_deletion	CDS_variant	1	A9
`Chr4:27952012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804135.1

489 aa

244

489

Myb_DNA-binding

PF00249 Myb_DNA-binding 48-73 aa

XP_057804136.1

448 aa

224

448

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 48-91 aa PF13921 Myb_DNA-bind_6 51-87 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804135.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	48	73	1.8e-09	38.3	Myb-like DNA-binding domain
`XP_057804136.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	48	91	2e-13	50.9	Myb-like DNA-binding domain
`XP_057804136.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	51	87	4.9e-05	24.1	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948152.1
GTACCGGATTTGTCGAGAGAGAGAGTGGCATTTCTTTCAAGAATTCAGTAAAAGATATGGGGACAGAGGGTGACGATGGACACGTGGCAGGAACACATTTAATCTCAGCCACAAGAACTCGCAGTGCTCACAACCAAAGATCCTTTTCGCTCCTCCAACCTTCTCGACCTTTCTATTGCTATTTTATTTTATTACAAAAAAAATTCAGTTTTATATTTGAGATTTGTGTCGAAAATCAGCATAATCCTACGTGGCCCTCC...

XM_057948153.1
CAAAGATCCTTTTCGCTCCTCCAACCTTCTCGACCTTTCTATTGCTATTTTATTTTATTACAAAAAAAATTCAGTTTTATATTTGAGATTTGTGTCGAAAATCAGCATAATCCTACGTGGCCCTCCCTGTTCCTATTTGGCTATATCTCCTCTCTGATCTGTTTTCTCTCACTCCTTCATTTATACACCATTGAGTCTATAACTGTTCCTCTCTCTCTCTCTCTCTCTCTCGATCTCTCGAGGAGTGAAGCTCAGGTCTT...

CDS

2 records

下载 CDS FASTA

LOC131019577
ATGGCTGCCGAAGCTAAGGATCAAACTGCAGGGTCTAGCCAGGATGCTTCTGGAGTTGTTAGCTCTGAATCCGCGGCTGCTCAAGCTGATAGAAACAGCTATGCACCTAAGGTGAGAAAACCCTATACCATCACCAAACAAAGAGAGAGGTGGACTGAGGAGGAACACCAGAGGTTTGTCGAAGCTCTGAAGCTATATGGTCGTGCTTGGCGCCAAATAGAAGGTGAGTGTGGTATAGGGTTGTTCCACGCCATAAAAAG...

Protein

2 records

下载 Protein FASTA

XP_057804135.1
MAAEAKDQTAGSSQDASGVVSSESAAAQADRNSYAPKVRKPYTITKQRERWTEEEHQRFVEALKLYGRAWRQIEGECGIGLFHAIKRSSSNSSLFQSSLSFKYKDLFLMRSCRHSEHVGNKTAIQIRSHAQKFFAKVTRDSSVDAEGSSSPIAIPPPRPKKKPLHPYPRKNVDRAEVTATHQQEGVTDDVSIAKGENYSPTSVFSAIGSDNLESSVADVHKSRLSPASCATDDFSANLFTDNDHETSNTSSKEDHGFGLP...

XP_057804136.1
MAAEAKDQTAGSSQDASGVVSSESAAAQADRNSYAPKVRKPYTITKQRERWTEEEHQRFVEALKLYGRAWRQIEEHVGNKTAIQIRSHAQKFFAKVTRDSSVDAEGSSSPIAIPPPRPKKKPLHPYPRKNVDRAEVTATHQQEGVTDDVSIAKGENYSPTSVFSAIGSDNLESSVADVHKSRLSPASCATDDFSANLFTDNDHETSNTSSKEDHGFGLPMKISSASLPDNKSTMKFELFPQETESTLDSVYSVEPCTSIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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