当前解析结果
SmilChr04G001700| 统一新 Gene ID | SmilChr04G001700 |
|---|---|
| 名称 | SmilChr04G001700 |
| 描述 | homeobox-leucine zipper protein HDG11-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 28124056 - 28127987 / - |
| NCBI Gene ID | LOC131019586 |
|---|---|
| GeneID | 131019586 |
| locus_tag | - |
| NCBI Name | LOC131019586 |
| 原始查询 | LOC131019586 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox-leucine zipper protein HDG11-like |
| 产物 | homeobox-leucine zipper protein HDG11-like |
| Arabidopsis | AT1G73360 (HDG11)homeodomain GLABROUS 11 [Source:NCBI gene (formerly Entrezgene);Acc:843671] identity=62.1; qcov=0.987; evalue=0; confidence=high |
| Rice | Os06g0208100 (Roc8(t))- identity=58.8; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008289 (lipid binding) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF01852 (START); PF25797 (PDF2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019586 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804143.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804143.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804143.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804143.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804143.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:28124539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B133,B88,C17 |
Chr4:28124612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:28124635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C75,D10 |
Chr4:28124653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:28124665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C35 |
Chr4:28124704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B30 |
Chr4:28125127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:28125347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr4:28125404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C1,C27,C55 |
Chr4:28126399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C83 |
Chr4:28126704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr4:28126783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804143.1PF00046
Homeodomain 22-77 aa
PF01852
START 223-450 aa
PF25797
PDF2_C 470-716 aa
XP_057804144.1PF00046
Homeodomain 22-77 aa
PF01852
START 223-450 aa
PF25797
PDF2_C 470-716 aa
XP_057804145.1PF00046
Homeodomain 22-77 aa
PF01852
START 223-450 aa
PF25797
PDF2_C 470-716 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804143.1 |
Pfam | PF00046 |
Homeodomain | Domain | 22 | 77 | 9.9e-19 | 67.6 | Homeodomain |
XP_057804143.1 |
Pfam | PF01852 |
START | Domain | 223 | 450 | 1.6e-39 | 136.2 | START domain |
XP_057804143.1 |
Pfam | PF25797 |
PDF2_C | Domain | 470 | 716 | 1.5e-96 | 322.9 | PDF2-like, C-terminal domain |
XP_057804144.1 |
Pfam | PF00046 |
Homeodomain | Domain | 22 | 77 | 9.9e-19 | 67.6 | Homeodomain |
XP_057804144.1 |
Pfam | PF01852 |
START | Domain | 223 | 450 | 1.6e-39 | 136.2 | START domain |
XP_057804144.1 |
Pfam | PF25797 |
PDF2_C | Domain | 470 | 716 | 1.5e-96 | 322.9 | PDF2-like, C-terminal domain |
XP_057804145.1 |
Pfam | PF00046 |
Homeodomain | Domain | 22 | 77 | 9.9e-19 | 67.6 | Homeodomain |
XP_057804145.1 |
Pfam | PF01852 |
START | Domain | 223 | 450 | 1.6e-39 | 136.2 | START domain |
XP_057804145.1 |
Pfam | PF25797 |
PDF2_C | Domain | 470 | 716 | 1.5e-96 | 322.9 | PDF2-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。