Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001730`

染色体: Chr04 坐标: 28530948-28535445 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001730`
名称	SmilChr04G001730
描述	ADP-ribosylation factor-like protein 2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	28530948 - 28535445 / `+`

ID 对照

NCBI Gene ID	`LOC131019611`
GeneID	`131019611`
locus_tag	`-`
NCBI Name	`LOC131019611`
原始查询	`LOC131019611`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor-like protein 2
产物	ADP-ribosylation factor-like protein 2
Arabidopsis	`AT2G18390` (TTN5) ADP-ribosylation factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:816354] identity=91.4; qcov=0.859; evalue=2.52e-82; confidence=high
Rice	`Os02g0327100` (OsTTN5) - identity=87.9; qcov=0.859; evalue=1.12e-89; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0006457 (protein folding); GO:0015630 (microtubule cytoskeleton)
KEGG	-
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:131019611

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Trans-golgi network	Trans-golgi network	0.80000	`XP_057804181.1`
2	Cytosol	细胞质基质	0.80000	`XP_057804183.1`
3	Cytoplasm	细胞质	0.60000	`XP_057804183.1`
4	Golgi apparatus	高尔基体	0.60000	`XP_057804181.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057804181.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:28533316`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,C13
`Chr4:28533318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:28533328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:28533560`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:28533794`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B98,C1,C80
`Chr4:28533797`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr4:28534437`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:28534487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B41,B59,C67
`Chr4:28534606`	`G`	`GGA`	2bp_insertion	frameshift_variant	2	B41,C67
`Chr4:28534606`	`G`	`GGA`	2bp_insertion	CDS_variant	2	B41,C67
`Chr4:28535095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A13,C13,D11
`Chr4:28535152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804181.1

185 aa

185

Arf

SRPRB

MMR_HSR1

Gtr1_RagA

Roc

Ras

PF00025 Arf 4-177 aa PF09439 SRPRB 16-142 aa PF01926 MMR_HSR1 18-126 aa PF04670 Gtr1_RagA 18-128 aa PF08477 Roc 18-128 aa PF00071 Ras 18-177 aa

XP_057804182.1

185 aa

185

Arf

SRPRB

MMR_HSR1

Gtr1_RagA

Roc

Ras

PF00025 Arf 4-177 aa PF09439 SRPRB 16-142 aa PF01926 MMR_HSR1 18-126 aa PF04670 Gtr1_RagA 18-128 aa PF08477 Roc 18-128 aa PF00071 Ras 18-177 aa

XP_057804183.1

163 aa

163

Arf

SRPRB

MMR_HSR1

Gtr1_RagA

Roc

Ras

PF00025 Arf 4-140 aa PF09439 SRPRB 16-138 aa PF01926 MMR_HSR1 18-126 aa PF04670 Gtr1_RagA 18-128 aa PF08477 Roc 18-128 aa PF00071 Ras 18-130 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804181.1`	Pfam	`PF00025`	Arf	Domain	4	177	1.9e-69	233.3	ADP-ribosylation factor family
`XP_057804181.1`	Pfam	`PF09439`	SRPRB	Domain	16	142	1.4e-08	35.1	Signal recognition particle receptor beta subunit
`XP_057804181.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	126	8.1e-06	26.6	50S ribosome-binding GTPase
`XP_057804181.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	18	128	9e-08	32.5	Gtr1/RagA G protein conserved region
`XP_057804181.1`	Pfam	`PF08477`	Roc	Domain	18	128	1.3e-11	45.5	Ras of Complex, Roc, domain of DAPkinase
`XP_057804181.1`	Pfam	`PF00071`	Ras	Domain	18	177	8.3e-11	42.4	Ras family
`XP_057804182.1`	Pfam	`PF00025`	Arf	Domain	4	177	1.9e-69	233.3	ADP-ribosylation factor family
`XP_057804182.1`	Pfam	`PF09439`	SRPRB	Domain	16	142	1.4e-08	35.1	Signal recognition particle receptor beta subunit
`XP_057804182.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	126	8.1e-06	26.6	50S ribosome-binding GTPase
`XP_057804182.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	18	128	9e-08	32.5	Gtr1/RagA G protein conserved region
`XP_057804182.1`	Pfam	`PF08477`	Roc	Domain	18	128	1.3e-11	45.5	Ras of Complex, Roc, domain of DAPkinase
`XP_057804182.1`	Pfam	`PF00071`	Ras	Domain	18	177	8.3e-11	42.4	Ras family
`XP_057804183.1`	Pfam	`PF00025`	Arf	Domain	4	140	3.4e-57	193.4	ADP-ribosylation factor family
`XP_057804183.1`	Pfam	`PF09439`	SRPRB	Domain	16	138	2.8e-08	34.1	Signal recognition particle receptor beta subunit
`XP_057804183.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	126	6e-06	27.1	50S ribosome-binding GTPase
`XP_057804183.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	18	128	9.8e-08	32.4	Gtr1/RagA G protein conserved region
`XP_057804183.1`	Pfam	`PF08477`	Roc	Domain	18	128	9.6e-12	45.9	Ras of Complex, Roc, domain of DAPkinase
`XP_057804183.1`	Pfam	`PF00071`	Ras	Domain	18	130	1.9e-08	34.8	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057948198.1
CAATTCAACATTGTTTTTTTTTTTTAAAGACCATGTCTCAAATTAAAAAAAATGGCCCAACTTTGATAAGTAAAATCAAGCCCAAACAAAAAACTCTCTCTTTTCTCTCTCTCATATACAATCGGTCTCCTCTCTCTCCTCGTATCTCTCACTCTCTCTCAATCTCACAGATACGCACACACATCCCCCACCGCTTCCTCCTCCGGCGAAGGGCGCCGTCTTCGACCACCTACGCCACAGGCATCTCCTCCGTCTCACCT...

XM_057948200.1
AACTTTGATAAGTAAAATCAAGCCCAAACAAAAAACTCTCTCTTTTCTCTCTCTCATATACAATCGGTCTCCTCTCTCTCCTCGTATCTCTCACTCTCTCTCAATCTCACAGATACGCACACACATCCCCCACCGCTTCCTCCTCCGGCGAAGGGCGCCGTCTTCGACCACCTACGCCACAGGCATCTCCTCCGTCTCACCTCTCGCTCCCTGTCTACCCCCTTCTATCACTCAGCGCGCACGGCGAGGCTGCACATGCC...

CDS

3 records

下载 CDS FASTA

LOC131019611
ATGGGACTTCTCAGCATAATCCGGAAAATTAAGCGCAAAGAAAAGGAGATGCGTATTCTTATGGTGGGTCTTGATAATTCTGGAAAGACTACAATAGTGATGAAGATTAATGGTGAAGACACTAGTGTAATCAGCCCCACACTTGGATTCAACATCAAAACCATGGCTTACCAAAAGTACACTTTGAACATATGGGATGTTGGAGGGCAGAGAACCATAAGGTCTTATTGGAGAAACTATTTCGAGCAAACTGATGGGTT...

Protein

3 records

下载 Protein FASTA

XP_057804181.1
MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVMKINGEDTSVISPTLGFNIKTMAYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKYELDNLLKEERLSGASLLIFANKQDIQGSLSPDEIAKVLNLDAMDKSRHWKIVGCSAFTGEGLLEGFDWMVQDIASRIYMLD

XP_057804182.1
MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVMKINGEDTSVISPTLGFNIKTMAYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKYELDNLLKEERLSGASLLIFANKQDIQGSLSPDEIAKVLNLDAMDKSRHWKIVGCSAFTGEGLLEGFDWMVQDIASRIYMLD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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