当前解析结果
SmilChr01G001649| 统一新 Gene ID | SmilChr01G001649 |
|---|---|
| 名称 | SmilChr01G001649 |
| 描述 | UDP-glucosyltransferase 29-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 30549545 - 30551299 / - |
| NCBI Gene ID | LOC131019633 |
|---|---|
| GeneID | 131019633 |
| locus_tag | - |
| NCBI Name | LOC131019633 |
| 原始查询 | LOC131019633 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucosyltransferase 29-like |
| 产物 | UDP-glucosyltransferase 29-like |
| Arabidopsis | AT5G65550 (AT5G65550)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836681] identity=33; qcov=0.907; evalue=5.12e-68; confidence=low |
| Rice | Os07g0672700- identity=41.2; qcov=0.998; evalue=8.48e-112; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019633 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057804210.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057804210.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804210.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804210.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804210.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:30549658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,C19,C43 |
Chr1:30549660 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B136 |
Chr1:30549660 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B136 |
Chr1:30549775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:30549839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:30549852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr1:30549868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:30549889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:30549898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr1:30549909 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr1:30549940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:30549941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804210.1PF26168
Glyco_transf_N 42-269 aa
PF00201
UDPGT 264-438 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804210.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 42 | 269 | 9.9e-12 | 46.0 | Glycosyltransferase, N-terminal domain |
XP_057804210.1 |
Pfam | PF00201 |
UDPGT | Family | 264 | 438 | 5.3e-18 | 65.8 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。