当前解析结果
SmilChr04G001775| 统一新 Gene ID | SmilChr04G001775 |
|---|---|
| 名称 | SmilChr04G001775 |
| 描述 | probable serine/threonine-protein kinase PBL2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29187889 - 29190742 / + |
| NCBI Gene ID | LOC131019652 |
|---|---|
| GeneID | 131019652 |
| locus_tag | - |
| NCBI Name | LOC131019652 |
| 原始查询 | LOC131019652 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable serine/threonine-protein kinase PBL2 |
| 产物 | probable serine/threonine-protein kinase PBL2 |
| Arabidopsis | AT3G04690 (ANX1)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819627] identity=49.8; qcov=0.475; evalue=2.06e-92; confidence=medium |
| Rice | Os01g0769700 (DRUS2)- identity=52.1; qcov=0.46; evalue=2.18e-94; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019652 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804224.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057804224.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804224.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804224.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804224.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29188046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B112,B18,C9 |
Chr4:29188080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B65 |
Chr4:29188546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr4:29188570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr4:29188591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr4:29188605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr4:29188716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B130,B65,B91 |
Chr4:29188814 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B133,C17 |
Chr4:29188899 |
GA |
G |
1bp_deletion | frameshift_variant | 19 | A15,A6,B133,B23,B24,B32,B33,B37,B50,B6,B62,C27,C36,C63,C64,C66,C8,C9,D5 |
Chr4:29189200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,B97 |
Chr4:29189314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:29189350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804224.1PF00069
Pkinase 26-298 aa
PF07714
PK_Tyr_Ser-Thr 28-299 aa
PF00069
Pkinase 393-601 aa
PF07714
PK_Tyr_Ser-Thr 393-658 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804224.1 |
Pfam | PF00069 |
Pkinase | Domain | 26 | 298 | 2.3e-69 | 234.5 | Protein kinase domain |
XP_057804224.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 28 | 299 | 3.6e-82 | 276.3 | Protein tyrosine and serine/threonine kinase |
XP_057804224.1 |
Pfam | PF00069 |
Pkinase | Domain | 393 | 601 | 2.3e-69 | 234.5 | Protein kinase domain |
XP_057804224.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 393 | 658 | 3.6e-82 | 276.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。