Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001784`

染色体: Chr04 坐标: 29258523-29265511 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001784`
名称	SmilChr04G001784
描述	uncharacterized SmilChr04G001784
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	29258523 - 29265511 / `-`

ID 对照

NCBI Gene ID	`LOC131019659`
GeneID	`131019659`
locus_tag	`-`
NCBI Name	`LOC131019659`
原始查询	`LOC131019659`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843680]; symbol=AT1G73450; hit=AT1G73450; species=arabidopsis; confidence=high
产物	Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843680]; symbol=AT1G73450; hit=AT1G73450; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73450` (AT1G73450) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843680] identity=58.9; qcov=1.04; evalue=0; confidence=high
Rice	`Os03g0719500` - identity=71; qcov=0.594; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0004713 (protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0018105 (peptidyl-serine phosphorylation); GO:0018107 (peptidyl-threonine phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131019659

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804230.1`
2	Chromosome	染色体	0.00000	`XP_057804230.1`
3	Centromere	着丝粒	0.00000	`XP_057804230.1`
4	Chromatin	染色质	0.00000	`XP_057804230.1`
5	Telomere	端粒	0.00000	`XP_057804230.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:29261746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:29262046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr4:29262060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:29262151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B34,B47,C7,D1
`Chr4:29262207`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B33,B90,B92,C87
`Chr4:29262297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B92,C13,C84,C87
`Chr4:29262540`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B120,C23,C41,C69,C75
`Chr4:29262661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B10,B53,B81,C42,C6
`Chr4:29262956`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr4:29264095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr4:29264260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B53
`Chr4:29264264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804230.1

1190 aa

595

1190

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 879-1181 aa PF07714 PK_Tyr_Ser-Thr 881-1085 aa

XP_057804231.1

1190 aa

595

1190

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 879-1181 aa PF07714 PK_Tyr_Ser-Thr 881-1085 aa

XP_057804232.1

1190 aa

595

1190

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 879-1181 aa PF07714 PK_Tyr_Ser-Thr 881-1085 aa

XP_057804233.1

1160 aa

580

1160

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 849-1151 aa PF07714 PK_Tyr_Ser-Thr 851-1055 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804230.1`	Pfam	`PF00069`	Pkinase	Domain	879	1181	1.5e-50	172.7	Protein kinase domain
`XP_057804230.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	881	1085	2.6e-17	63.7	Protein tyrosine and serine/threonine kinase
`XP_057804231.1`	Pfam	`PF00069`	Pkinase	Domain	879	1181	1.5e-50	172.7	Protein kinase domain
`XP_057804231.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	881	1085	2.6e-17	63.7	Protein tyrosine and serine/threonine kinase
`XP_057804232.1`	Pfam	`PF00069`	Pkinase	Domain	879	1181	1.5e-50	172.7	Protein kinase domain
`XP_057804232.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	881	1085	2.6e-17	63.7	Protein tyrosine and serine/threonine kinase
`XP_057804233.1`	Pfam	`PF00069`	Pkinase	Domain	849	1151	1.6e-50	172.6	Protein kinase domain
`XP_057804233.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	851	1055	2.6e-17	63.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009100367.1
TCAAAAGTTTAAAAAAGTTCAAACTCAATTATGATTTTTTTATTCGTATTAACATATTCTTCGTAGTATTGCTTACACAGAAAAGTGAAGAAGTGTTTCAAAATTTGTTTACTCAGATTTCTTAATAAGTTTGGGCGATGGATTCAATAACTCCGTTTTTGGCTTCTCGAATAGCATCTCGTCGATCTGTTTAGGTTAGTGGTGTTTCCAGTACTTGGATTGGATTGCTCGAAGTGTTTCGAATGGCTGATTCGGGTTCT...

XM_057948247.1
AAGTTTAAAAAAGTTCAAACTCAATTATGATTTTTTTATTCGTATTAACATATTCTTCGTAGTATTGCTTACACAGAAAAGTGAAGAAGTGTTTCAAAATTTGTTTACTCAGATTTCTTAATAAGTTTGGGCGATGGATTCAATAACTCCGTTTTTGGCTTCTCGAATAGCATCTCGTCGATCTGTTTAGGTTAGTGGTGTTTCCAGTACTTGGATTGGATTGCTCGAAGTGTTTCGAATGGCTGATTCGGGTTCTGTAG...

CDS

4 records

下载 CDS FASTA

LOC131019659
ATGGCTGATTCGGGTTCTGTAGATGTTATATTGGAGTTTCTGAAAAGGAACAAATTTACCAAGGCAGAGGCTGCATTGCGGAGTGAATTGGGTAACAGACCTGACTTGAATGGGATTCTTCAAAAGCTTATTCTTGACGATAAGGAGTCAGGTAGATCAGGCAAAGAATTAAATGGGGGTGTTTCTGGAGAAGAAGATAAAAACACGAAAAGTACTGGACATGGTGGGGAAACTCTTAAGGGTTCATTTACCTCGAGTAT...

Protein

4 records

下载 Protein FASTA

XP_057804230.1
MADSGSVDVILEFLKRNKFTKAEAALRSELGNRPDLNGILQKLILDDKESGRSGKELNGGVSGEEDKNTKSTGHGGETLKGSFTSSIVEASKELIVKEVDSGTGRNGSDNKWKNAGTIGKQGKLGENIVPSDKNFAFSNGLDDTVLDLYSWKYGTSNGPVTPYQNDGGSADENNFLGFQVPGKAKTNSTETLESGQVHRKSGDDASVSGEKRITWPVSVSTDLTYEKKSDRKEVVDQQKMPSITCSKDDLVDNLWSRSDV...

XP_057804231.1
MADSGSVDVILEFLKRNKFTKAEAALRSELGNRPDLNGILQKLILDDKESGRSGKELNGGVSGEEDKNTKSTGHGGETLKGSFTSSIVEASKELIVKEVDSGTGRNGSDNKWKNAGTIGKQGKLGENIVPSDKNFAFSNGLDDTVLDLYSWKYGTSNGPVTPYQNDGGSADENNFLGFQVPGKAKTNSTETLESGQVHRKSGDDASVSGEKRITWPVSVSTDLTYEKKSDRKEVVDQQKMPSITCSKDDLVDNLWSRSDV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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