当前解析结果
SmilChr04G001792| 统一新 Gene ID | SmilChr04G001792 |
|---|---|
| 名称 | SmilChr04G001792 |
| 描述 | cytochrome P450 71A6-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29353729 - 29356107 / + |
| NCBI Gene ID | LOC131019665 |
|---|---|
| GeneID | 131019665 |
| locus_tag | - |
| NCBI Name | LOC131019665 |
| 原始查询 | LOC131019665 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 71A6-like |
| 产物 | cytochrome P450 71A6-like |
| Arabidopsis | AT3G48270 (CYP71A26)cytochrome P450, family 71, subfamily A, polypeptide 26 [Source:NCBI gene (formerly Entrezgene);Acc:823985] identity=51; qcov=0.926; evalue=9.23e-164; confidence=high |
| Rice | Os09g0441400- identity=40.2; qcov=1.03; evalue=1.71e-129; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019665 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057804240.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057804240.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804240.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804240.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804240.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29354082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B112,B18,C9 |
Chr4:29354149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:29354191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:29354202 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr4:29354239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr4:29354271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr4:29354560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:29354571 |
A |
AGG |
2bp_insertion | frameshift_variant | 2 | B14,B87 |
Chr4:29354571 |
A |
AGG |
2bp_insertion | CDS_variant | 2 | B14,B87 |
Chr4:29354609 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B14,B44,B87 |
Chr4:29354609 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B14,B44,B87 |
Chr4:29354649 |
G |
A |
EMS_canonical_SNV | stop_gained | 210 | A1,A10,A11,A15,A16,A18,A19,A2,A20,A23,A24,A3,A5,A6,A8,A9,B1,B10,B100,B103,B104,B107,B108,B109,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B125,B127,B129,B13,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B16,B18,B19,B2,B20,B21,B22,B23,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B36,B37,B39,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B73,B74,B75,B76,B78,B79,B81,B83,B84,B85,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C10,C11,C12,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C44,C47,C48,C49,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C70,C71,C72,C74,C75,C76,C77,C79,C8,C81,C83,C84,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804240.1PF00067
p450 37-485 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804240.1 |
Pfam | PF00067 |
p450 | Domain | 37 | 485 | 1.8e-105 | 354.1 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。