Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001799`

染色体: Chr04 坐标: 29460879-29462928 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001799`
名称	SmilChr04G001799
描述	manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	29460879 - 29462928 / `+`

ID 对照

NCBI Gene ID	`LOC131019672`
GeneID	`131019672`
locus_tag	`-`
NCBI Name	`LOC131019672`
原始查询	`LOC131019672`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like
产物	manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like
Arabidopsis	`AT4G24730` (AT4G24730) manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828575] identity=66.5; qcov=0.889; evalue=1.21e-148; confidence=high
Rice	`Os07g0688000` (OsNRT3.2) - identity=66; qcov=0.93; evalue=2.96e-167; confidence=high
GO	GO:0008663 (2',3'-cyclic-nucleotide 2'-phosphodiesterase activity); GO:0030145 (manganese ion binding); GO:0047631 (ADP-ribose diphosphatase activity); GO:0047734 (CDP-glycerol diphosphatase activity)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00149 (Metallophos)
InterPro	-
eggNOG	-
NR	GeneID:131019672

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057804244.1`
2	Cytoplasm	细胞质	0.80000	`XP_057804244.1`
3	Nucleus	细胞核	0.60000	`XP_057804244.1`
4	Chromosome	染色体	0.00000	`XP_057804244.1`
5	Centromere	着丝粒	0.00000	`XP_057804244.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:29461749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B66,C10,C7,C79
`Chr4:29461807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:29461859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B118,B122,B65
`Chr4:29461895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,B67,B75
`Chr4:29462004`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr4:29462006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B128,B22,C33
`Chr4:29462021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B66,C10,C7,C79
`Chr4:29462084`	`C`	`T`	EMS_canonical_SNV	stop_gained	153	A10,A13,A15,A18,A19,A20,A21,A22,A23,A25,A3,A4,A5,A7,A8,B1,B101,B105,B106,B107,B108,B109,B110,B111,B112,B113,B115,B117,B12,B120,B122,B123,B124,B125,B126,B127,B129,B130,B131,B133,B134,B135,B137,B138,B139,B15,B19,B2,B20,B21,B22,B24,B25,B26,B27,B28,B29,B31,B33,B34,B35,B37,B38,B42,B43,B5,B51,B53,B54,B55,B57,B6,B60,B64,B67,B68,B69,B7,B70,B72,B73,B76,B77,B79,B8,B81,B82,B84,B85,B86,B88,B89,B90,B91,B92,B95,B97,B98,C10,C13,C18,C2,C21,C25,C26,C27,C28,C3,C31,C32,C33,C34,C35,C38,C39,C4,C40,C42,C44,C45,C46,C47,C48,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C60,C63,C65,C68,C7,C73,C74,C78,C79,C80,C81,C82,C84,C85,C86,C9,D1,D10,D2,D7
`Chr4:29462132`	`C`	`T`	EMS_canonical_SNV	stop_gained	33	A20,A22,A23,A4,B1,B106,B111,B115,B118,B127,B135,B139,B20,B26,B27,B31,B42,B54,B60,B7,B77,B79,B80,B97,C27,C33,C40,C46,C5,C55,C80,C84,C86
`Chr4:29462195`	`AAG`	`A`	2bp_deletion	frameshift_variant	99	A13,A20,A21,A23,A25,A4,A5,A6,A8,B106,B107,B108,B11,B112,B113,B115,B118,B120,B127,B129,B131,B133,B135,B137,B139,B19,B2,B20,B21,B25,B26,B27,B28,B29,B31,B37,B42,B43,B5,B51,B53,B55,B57,B6,B64,B67,B68,B69,B7,B70,B76,B79,B80,B82,B84,B86,B88,B90,B91,B92,B97,C10,C13,C18,C2,C21,C26,C27,C28,C3,C31,C33,C34,C35,C39,C4,C40,C42,C45,C47,C48,C5,C50,C54,C55,C56,C6,C60,C63,C65,C73,C78,C80,C82,C84,C85,C86,C9,D2
`Chr4:29462211`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B94,D1
`Chr4:29462213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804244.1

342 aa

171

342

Metallophos

PF00149 Metallophos 25-270 aa

XP_057804246.1

342 aa

171

342

Metallophos

PF00149 Metallophos 25-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804244.1`	Pfam	`PF00149`	Metallophos	Domain	25	270	4.6e-11	44.2	Calcineurin-like phosphoesterase
`XP_057804246.1`	Pfam	`PF00149`	Metallophos	Domain	25	270	4.6e-11	44.2	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948261.1
ATACTTTCTTTTATCATTCTTCGGTTGATTTCCACGGTTACTTGGTCTAACTTGGACGATCAAATCATCAAACTACATGTTTCAGTTCTCAGACTCTAACTGCATAGTCGTCTCGTCTCTTTCTCCCGGCGTCTTCGCCTCTCCCGATTCTTTGCCAGAAACAAAATTGGAGTATTAGAATTCCTCACTGAGTTTACTAGGATGGGAGTTAGCTCCTCAATGGGTTATGAAAATGGAACAGTCAGTGAAGAGAAGAAGCA...

XM_057948263.1
TTGAATAAGGGAGTTTTCAAGAATCTGTATGAATATATGATAATTGATTCGTATGCTTTTTGTTGTCGATTAGACGCTTGTTGCTCTTGGTTTTCGGATTTACTGTTCGAAATTTCATAGGTCTGGAGATTCTTGGAGAGTATAATATTCAAGATTTGAACTTGGCACACTTTATGGGCATTTACTTTTGAGGATTAACCCAGATAGAGTTTACTAGGATGGGAGTTAGCTCCTCAATGGGTTATGAAAATGGAACAGTC...

CDS

2 records

下载 CDS FASTA

LOC131019672
ATGGGAGTTAGCTCCTCAATGGGTTATGAAAATGGAACAGTCAGTGAAGAGAAGAAGCAGCCTCTTGTTTCTTTTGGGGTGATAGCAGACGTGCAGTATGCGGACATCCCAGATGGCCACTCGTTTAGTGGTGTGCCTCGCTACTATAGGCACAGCCTGCTCGTGTTGCAAAGAGCAGTGCAGCAATGGAACGAGAAAAGGGTGAAGTTCGTCATAAACTTTGGGGACACCATTGATGGCTTCTGCCCGAAAGATCATTC...

Protein

2 records

下载 Protein FASTA

XP_057804244.1
MGVSSSMGYENGTVSEEKKQPLVSFGVIADVQYADIPDGHSFSGVPRYYRHSLLVLQRAVQQWNEKRVKFVINFGDTIDGFCPKDHSLAAIQRVLDEFGAFDGPVYHMIGNHCLYNLPREKLLPLLNIASHNNRAYYDFSPIPEVRFVVLDGYDISSIGWPQDHPNTIKAMNFLKERNPNSDKNSPNGLVGLERRFLMFNGAVGEEQMRWLDNVLQDATELNQIVVVCCHLPLDPGASFIESLLWNYDEVMEVIHRYNCV...

XP_057804246.1
MGVSSSMGYENGTVSEEKKQPLVSFGVIADVQYADIPDGHSFSGVPRYYRHSLLVLQRAVQQWNEKRVKFVINFGDTIDGFCPKDHSLAAIQRVLDEFGAFDGPVYHMIGNHCLYNLPREKLLPLLNIASHNNRAYYDFSPIPEVRFVVLDGYDISSIGWPQDHPNTIKAMNFLKERNPNSDKNSPNGLVGLERRFLMFNGAVGEEQMRWLDNVLQDATELNQIVVVCCHLPLDPGASFIESLLWNYDEVMEVIHRYNCV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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