当前解析结果
SmilChr04G001803| 统一新 Gene ID | SmilChr04G001803 |
|---|---|
| 名称 | SmilChr04G001803 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29515161 - 29519424 / - |
| NCBI Gene ID | LOC131019675 |
|---|---|
| GeneID | 131019675 |
| locus_tag | - |
| NCBI Name | LOC131019675 |
| 原始查询 | LOC131019675 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.7; qcov=1.06; evalue=2.2e-90; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=27.3; qcov=0.946; evalue=5.16e-74; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019675 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804249.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804249.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804249.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804249.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804249.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29516484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr4:29516568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr4:29516702 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B2 |
Chr4:29516730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,C35 |
Chr4:29516737 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | A24 |
Chr4:29516737 |
CT |
C |
1bp_deletion | CDS_variant | 1 | A24 |
Chr4:29516979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:29517007 |
GTC |
G |
2bp_deletion | frameshift_variant | 1 | C82 |
Chr4:29517007 |
GTC |
G |
2bp_deletion | CDS_variant | 1 | C82 |
Chr4:29517024 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C72 |
Chr4:29517204 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr4:29517264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804249.1PF18052
Rx_N 5-87 aa
PF00931
NB-ARC 153-318 aa
PF23559
WHD_DRP 412-482 aa
PF23598
LRR_14 537-857 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804249.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 87 | 1.8e-16 | 60.7 | Rx N-terminal domain |
XP_057804249.1 |
Pfam | PF00931 |
NB-ARC | Domain | 153 | 318 | 3.5e-40 | 138.1 | NB-ARC domain |
XP_057804249.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 412 | 482 | 4.9e-21 | 75.3 | Disease resistance protein Winged helix domain |
XP_057804249.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 537 | 857 | 1.8e-13 | 50.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。