当前解析结果
SmilChr04G001826| 统一新 Gene ID | SmilChr04G001826 |
|---|---|
| 名称 | SmilChr04G001826 |
| 描述 | pachytene checkpoint protein 2 homolog |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29796969 - 29800781 / - |
| NCBI Gene ID | LOC131019696 |
|---|---|
| GeneID | 131019696 |
| locus_tag | - |
| NCBI Name | LOC131019696 |
| 原始查询 | LOC131019696 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pachytene checkpoint protein 2 homolog |
| 产物 | pachytene checkpoint protein 2 homolog |
| Arabidopsis | AT4G24710 (AT4G24710)pachytene checkpoint-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828573] identity=73.5; qcov=0.987; evalue=0; confidence=high |
| Rice | Os04g0479000 (CRC1)- identity=74.4; qcov=0.913; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005694 (chromosome); GO:0007131 (reciprocal meiotic recombination); GO:0016887 (ATP hydrolysis activity); GO:0051598 (meiotic recombination checkpoint signaling) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF13191 (AAA_16); PF13401 (AAA_22); PF23242 (AAA_lid_TRIP13_C); PF23563 (TRIP13_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019696 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804268.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057804268.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057804268.1 |
| 4 | Nucleoplasm | 核质 | 0.60000 | XP_057804268.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804268.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29797240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:29797278 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | B127 |
Chr4:29797278 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | B127 |
Chr4:29797559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:29797712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B37,C3,C86,D11 |
Chr4:29797714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr4:29798405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:29800192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B68 |
Chr4:29800201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B68,B91 |
Chr4:29800205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr4:29800468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804268.1PF23563
TRIP13_N 50-138 aa
PF13401
AAA_22 204-297 aa
PF13191
AAA_16 204-320 aa
PF00004
AAA 206-351 aa
PF23242
AAA_lid_TRIP13_C 354-464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804268.1 |
Pfam | PF23563 |
TRIP13_N | Domain | 50 | 138 | 1e-27 | 96.8 | TRIP13 N-terminal domain |
XP_057804268.1 |
Pfam | PF13401 |
AAA_22 | Domain | 204 | 297 | 3.3e-08 | 34.6 | AAA domain |
XP_057804268.1 |
Pfam | PF13191 |
AAA_16 | Domain | 204 | 320 | 2.8e-08 | 35.2 | AAA ATPase domain |
XP_057804268.1 |
Pfam | PF00004 |
AAA | Domain | 206 | 351 | 5e-28 | 98.9 | ATPase family associated with various cellular activities (AAA) |
XP_057804268.1 |
Pfam | PF23242 |
AAA_lid_TRIP13_C | Domain | 354 | 464 | 8.8e-36 | 123.2 | TRIP13-like, AAA+ ATPase lid C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。