当前解析结果
SmilChr04G001526| 统一新 Gene ID | SmilChr04G001526 |
|---|---|
| 名称 | SmilChr04G001526 |
| 描述 | uncharacterized SmilChr04G001526 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 25175757 - 25176549 / - |
| NCBI Gene ID | LOC131019735 |
|---|---|
| GeneID | 131019735 |
| locus_tag | - |
| NCBI Name | LOC131019735 |
| 原始查询 | LOC131019735 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824565]; symbol=AT3G53980; hit=AT3G53980; species=arabidopsis; confidence=medium |
| 产物 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824565]; symbol=AT3G53980; hit=AT3G53980; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G53980 (AT3G53980)Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824565] identity=69.9; qcov=0.816; evalue=1.93e-46; confidence=medium |
| Rice | Os01g0849000 (OsLTPd5)- identity=60; qcov=0.833; evalue=2.65e-37; confidence=medium |
| GO | GO:0005504 (fatty acid binding); GO:0009627 (systemic acquired resistance) |
| KEGG | - |
| Pfam | PF00234 (Tryp_alpha_amyl); PF14368 (LTP_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019735 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057804305.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057804305.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804305.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804305.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804305.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:25176424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B14,B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804305.1PF14368
LTP_2 32-104 aa
PF00234
Tryp_alpha_amyl 36-108 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804305.1 |
Pfam | PF14368 |
LTP_2 | Family | 32 | 104 | 2.1e-11 | 44.5 | Probable lipid transfer |
XP_057804305.1 |
Pfam | PF00234 |
Tryp_alpha_amyl | Domain | 36 | 108 | 2.1e-10 | 41.4 | Protease inhibitor/seed storage/LTP family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。