当前解析结果
SmilChr04G001054| 统一新 Gene ID | SmilChr04G001054 |
|---|---|
| 名称 | SmilChr04G001054 |
| 描述 | B3 domain-containing transcription repressor VAL2-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 15001703 - 15007729 / - |
| NCBI Gene ID | LOC131019787 |
|---|---|
| GeneID | 131019787 |
| locus_tag | - |
| NCBI Name | LOC131019787 |
| 原始查询 | LOC131019787 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | B3 domain-containing transcription repressor VAL2-like |
| 产物 | B3 domain-containing transcription repressor VAL2-like |
| Arabidopsis | AT4G32010 (HSL1)HSI2-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:829332] identity=50.6; qcov=0.901; evalue=0; confidence=high |
| Rice | Os07g0679700 (OsVAL2)- identity=50.5; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF02362 (B3); PF07496 (zf-CW); PF25813 (zf_VAL1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019787 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804332.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804332.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804332.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804332.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804332.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:15001947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C16,D3 |
Chr4:15002106 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B100,B13,C69 |
Chr4:15002124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B24,B52,B75 |
Chr4:15002134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A23,B100,B13,C60,C69 |
Chr4:15002143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr4:15002160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr4:15002273 |
G |
GCT |
2bp_insertion | frameshift_variant | 65 | A1,A2,A20,A23,A25,A3,B103,B104,B113,B119,B125,B126,B13,B130,B16,B19,B2,B20,B21,B23,B24,B28,B3,B40,B43,B45,B52,B53,B55,B56,B57,B61,B64,B65,B66,B67,B70,B73,B77,B88,B90,B91,B98,C15,C19,C27,C30,C31,C37,C38,C39,C40,C51,C52,C59,C61,C67,C69,C7,C75,C80,D11,D3,D5,D9 |
Chr4:15002276 |
GCC |
G |
2bp_deletion | frameshift_variant | 65 | A1,A2,A20,A23,A25,A3,B103,B104,B113,B119,B125,B126,B13,B130,B16,B19,B2,B20,B21,B23,B24,B28,B3,B40,B43,B45,B52,B53,B55,B56,B57,B61,B64,B65,B66,B67,B70,B73,B77,B88,B90,B91,B98,C15,C19,C27,C30,C31,C37,C38,C39,C40,C51,C52,C59,C61,C67,C69,C7,C75,C80,D11,D3,D5,D9 |
Chr4:15002284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C17,C25,C7 |
Chr4:15002293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr4:15002311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B64,C57 |
Chr4:15002313 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804332.1PF25813
zf_VAL1_N 49-94 aa
PF02362
B3 305-404 aa
PF07496
zf-CW 573-615 aa
XP_057804333.1PF25813
zf_VAL1_N 49-94 aa
PF02362
B3 305-404 aa
PF07496
zf-CW 572-614 aa
XP_057804334.1PF25813
zf_VAL1_N 1-46 aa
PF02362
B3 257-356 aa
PF07496
zf-CW 525-567 aa
XP_057804335.1PF02362
B3 208-307 aa
PF07496
zf-CW 476-518 aa
XP_057804337.1PF02362
B3 208-307 aa
PF07496
zf-CW 476-518 aa
XP_057804338.1PF02362
B3 171-270 aa
PF07496
zf-CW 439-481 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804332.1 |
Pfam | PF25813 |
zf_VAL1_N | Domain | 49 | 94 | 2.6e-22 | 79.2 | VAL1-like, N-terminal zinc finger domain |
XP_057804332.1 |
Pfam | PF02362 |
B3 | Domain | 305 | 404 | 4.8e-16 | 59.2 | B3 DNA binding domain |
XP_057804332.1 |
Pfam | PF07496 |
zf-CW | Domain | 573 | 615 | 1.1e-08 | 35.6 | CW-type Zinc Finger |
XP_057804333.1 |
Pfam | PF25813 |
zf_VAL1_N | Domain | 49 | 94 | 2.6e-22 | 79.2 | VAL1-like, N-terminal zinc finger domain |
XP_057804333.1 |
Pfam | PF02362 |
B3 | Domain | 305 | 404 | 4.8e-16 | 59.3 | B3 DNA binding domain |
XP_057804333.1 |
Pfam | PF07496 |
zf-CW | Domain | 572 | 614 | 1.1e-08 | 35.6 | CW-type Zinc Finger |
XP_057804334.1 |
Pfam | PF25813 |
zf_VAL1_N | Domain | 1 | 46 | 2.4e-22 | 79.3 | VAL1-like, N-terminal zinc finger domain |
XP_057804334.1 |
Pfam | PF02362 |
B3 | Domain | 257 | 356 | 4.5e-16 | 59.3 | B3 DNA binding domain |
XP_057804334.1 |
Pfam | PF07496 |
zf-CW | Domain | 525 | 567 | 1e-08 | 35.7 | CW-type Zinc Finger |
XP_057804335.1 |
Pfam | PF02362 |
B3 | Domain | 208 | 307 | 4.3e-16 | 59.4 | B3 DNA binding domain |
XP_057804335.1 |
Pfam | PF07496 |
zf-CW | Domain | 476 | 518 | 4.2e-09 | 37.0 | CW-type Zinc Finger |
XP_057804337.1 |
Pfam | PF02362 |
B3 | Domain | 208 | 307 | 4.3e-16 | 59.4 | B3 DNA binding domain |
XP_057804337.1 |
Pfam | PF07496 |
zf-CW | Domain | 476 | 518 | 4.2e-09 | 37.0 | CW-type Zinc Finger |
XP_057804338.1 |
Pfam | PF02362 |
B3 | Domain | 171 | 270 | 4e-16 | 59.5 | B3 DNA binding domain |
XP_057804338.1 |
Pfam | PF07496 |
zf-CW | Domain | 439 | 481 | 4.3e-09 | 37.0 | CW-type Zinc Finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。