当前解析结果
SmilChr04G001070| 统一新 Gene ID | SmilChr04G001070 |
|---|---|
| 名称 | SmilChr04G001070 |
| 描述 | helicase-like transcription factor CHR28 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 15385766 - 15392976 / + |
| NCBI Gene ID | LOC131019791 |
|---|---|
| GeneID | 131019791 |
| locus_tag | - |
| NCBI Name | LOC131019791 |
| 原始查询 | LOC131019791 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | helicase-like transcription factor CHR28 |
| 产物 | helicase-like transcription factor CHR28 |
| Arabidopsis | AT1G50410 (AT1G50410)SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841463] identity=59.2; qcov=0.84; evalue=0; confidence=high |
| Rice | Os08g0180300 (BRHIS1)- identity=54; qcov=0.848; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0046872 (metal ion binding); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF00176 (SNF2-rel_dom); PF00271 (Helicase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019791 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804346.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804346.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804346.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804346.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804346.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:15386849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C13 |
Chr4:15387367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr4:15387447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:15388636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr4:15389159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr4:15389617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:15391078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:15391719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr4:15391898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:15392034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B108,B27,C43,D11 |
Chr4:15392094 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B66 |
Chr4:15392094 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804346.1PF00176
SNF2-rel_dom 326-725 aa
PF00097
zf-C3HC4 766-802 aa
PF00271
Helicase_C 897-994 aa
XP_057804347.1PF00176
SNF2-rel_dom 326-725 aa
PF00097
zf-C3HC4 766-802 aa
PF00271
Helicase_C 897-994 aa
XP_057804348.1PF00176
SNF2-rel_dom 318-717 aa
PF00097
zf-C3HC4 758-794 aa
PF00271
Helicase_C 889-986 aa
XP_057804349.1PF00176
SNF2-rel_dom 318-717 aa
PF00097
zf-C3HC4 758-794 aa
PF00271
Helicase_C 889-986 aa
XP_057804350.1PF00176
SNF2-rel_dom 270-669 aa
PF00097
zf-C3HC4 710-746 aa
PF00271
Helicase_C 841-938 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804346.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 326 | 725 | 2.5e-70 | 237.6 | SNF2-related domain |
XP_057804346.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 766 | 802 | 2.6e-07 | 31.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057804346.1 |
Pfam | PF00271 |
Helicase_C | Domain | 897 | 994 | 2e-21 | 77.0 | Helicase conserved C-terminal domain |
XP_057804347.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 326 | 725 | 2.5e-70 | 237.6 | SNF2-related domain |
XP_057804347.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 766 | 802 | 2.6e-07 | 31.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057804347.1 |
Pfam | PF00271 |
Helicase_C | Domain | 897 | 994 | 2e-21 | 77.0 | Helicase conserved C-terminal domain |
XP_057804348.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 318 | 717 | 2.4e-70 | 237.6 | SNF2-related domain |
XP_057804348.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 758 | 794 | 2.6e-07 | 31.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057804348.1 |
Pfam | PF00271 |
Helicase_C | Domain | 889 | 986 | 2e-21 | 77.0 | Helicase conserved C-terminal domain |
XP_057804349.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 318 | 717 | 2.4e-70 | 237.6 | SNF2-related domain |
XP_057804349.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 758 | 794 | 2.6e-07 | 31.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057804349.1 |
Pfam | PF00271 |
Helicase_C | Domain | 889 | 986 | 2e-21 | 77.0 | Helicase conserved C-terminal domain |
XP_057804350.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 270 | 669 | 2.2e-70 | 237.8 | SNF2-related domain |
XP_057804350.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 710 | 746 | 2.5e-07 | 31.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057804350.1 |
Pfam | PF00271 |
Helicase_C | Domain | 841 | 938 | 1.8e-21 | 77.2 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。