Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001099`

染色体: Chr04 坐标: 15752974-15757619 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001099`
名称	SmilChr04G001099
描述	vacuolar-sorting receptor 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	15752974 - 15757619 / `+`

ID 对照

NCBI Gene ID	`LOC131019796`
GeneID	`131019796`
locus_tag	`-`
NCBI Name	`LOC131019796`
原始查询	`LOC131019796`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar-sorting receptor 1-like
产物	vacuolar-sorting receptor 1-like
Arabidopsis	`AT3G52850` (VSR1) vacuolar sorting receptor homolog 1 [Source:NCBI gene (formerly Entrezgene);Acc:824451] identity=72.2; qcov=0.981; evalue=0; confidence=high
Rice	`Os11g0116550` - identity=76.1; qcov=0.974; evalue=0; confidence=high
GO	GO:0005509 (calcium ion binding)
KEGG	-
Pfam	PF02225 (PA); PF25011 (VSR_TRX)
InterPro	-
eggNOG	-
NR	GeneID:131019796

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057804361.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057804361.1`
3	Endocytic vesicle	Endocytic vesicle	0.20000	`XP_057804361.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057804362.1`
5	Lysosome	溶酶体	0.20000	`XP_057804361.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:15754591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B30,B81,C6
`Chr4:15754619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr4:15754743`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B87,C78,D9
`Chr4:15754882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:15754967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B30,B81,C6
`Chr4:15756293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B50,B83,C59,D11
`Chr4:15756356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,B79,D11
`Chr4:15757245`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B52
`Chr4:15757245`	`T`	`TC`	1bp_insertion	CDS_variant	1	B52
`Chr4:15757270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr4:15757276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B108,B27,C43
`Chr4:15757403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B30,B81,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804361.1

644 aa

322

644

VSR_TRX

PF02225 PA 59-161 aa PF25011 VSR_TRX 188-395 aa

XP_057804362.1

623 aa

312

623

VSR_TRX

PF02225 PA 59-161 aa PF25011 VSR_TRX 188-395 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804361.1`	Pfam	`PF02225`	PA	Domain	59	161	2.9e-14	53.7	PA domain
`XP_057804361.1`	Pfam	`PF25011`	VSR_TRX	Domain	188	395	1.9e-104	348.6	Vacuolar sorting receptor thioredoxin-like domain
`XP_057804362.1`	Pfam	`PF02225`	PA	Domain	59	161	2.7e-14	53.8	PA domain
`XP_057804362.1`	Pfam	`PF25011`	VSR_TRX	Domain	188	395	1.8e-104	348.7	Vacuolar sorting receptor thioredoxin-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948378.1
TAGACTAAATCAACGTTTTCCATCATCAAGAATCGGTCCAAAAATATTTATAAAATTTTGTTATAGATCCAAAATCGATTATTATTCTAATCTTATGCTAATACCGACACTATTGTAGTTTTCATTATTAACACGTCTTCACAATTACTAATCCAAATTCCACTTTTTTTTATTCTTTTAAATATTCATTTTTTTTTACTAAAGTTGACTCCTCTATTCAGCTTTTTCCCTCAGCTTACTTGCAGTTGCAAAATCCGTTT...

XM_057948379.1
TAGACTAAATCAACGTTTTCCATCATCAAGAATCGGTCCAAAAATATTTATAAAATTTTGTTATAGATCCAAAATCGATTATTATTCTAATCTTATGCTAATACCGACACTATTGTAGTTTTCATTATTAACACGTCTTCACAATTACTAATCCAAATTCCACTTTTTTTTATTCTTTTAAATATTCATTTTTTTTTACTAAAGTTGACTCCTCTATTCAGCTTTTTCCCTCAGCTTACTTGCAGTTGCAAAATCCGTTT...

CDS

2 records

下载 CDS FASTA

LOC131019796
ATGAGAGAGAAGTTTGGAATTTTAGTTTGTGTTTTATTAGTTCTCTGCGGTTCCTGCTTGGGGAGATTTCTAGTGGAGAAGAACAGTTTGAAGGTGACATCACCGGATTCATTAAAAGGTGTTTATGAGAGCGCGATTGGGAATTTTGGGGTTCCTCAATATGGAGGAACGATGTCTGGCTCTGTTTTCTACCCTAATTCCAATCAGAAGGGGTGCAGTAGCTTTGAAGATGTCGAAGCTTCCTTGAAGAAGAAGCCTGG...

Protein

2 records

下载 Protein FASTA

XP_057804361.1
MREKFGILVCVLLVLCGSCLGRFLVEKNSLKVTSPDSLKGVYESAIGNFGVPQYGGTMSGSVFYPNSNQKGCSSFEDVEASLKKKPGGIPIFLLADRGECYFTLKAWNAQNGGAAAILVADDRNEPLITMDNPEQEDANPDYLQNITIPSALISKDLGDKIKKELAKGEMVSVNLDWREALPHPDERVEYEFWTNSNDECGAKCESQLDFVRDFKGAAQILEQKGYTQFIPRYITWYCPDAFKSSKQCKSQCINQGRYCA...

XP_057804362.1
MREKFGILVCVLLVLCGSCLGRFLVEKNSLKVTSPDSLKGVYESAIGNFGVPQYGGTMSGSVFYPNSNQKGCSSFEDVEASLKKKPGGIPIFLLADRGECYFTLKAWNAQNGGAAAILVADDRNEPLITMDNPEQEDANPDYLQNITIPSALISKDLGDKIKKELAKGEMVSVNLDWREALPHPDERVEYEFWTNSNDECGAKCESQLDFVRDFKGAAQILEQKGYTQFIPRYITWYCPDAFKSSKQCKSQCINQGRYCA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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