Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001065`

染色体: Chr04 坐标: 15219369-15223491 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001065`
名称	SmilChr04G001065
描述	uncharacterized SmilChr04G001065
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	15219369 - 15223491 / `-`

ID 对照

NCBI Gene ID	`LOC131019802`
GeneID	`131019802`
locus_tag	`-`
NCBI Name	`LOC131019802`
原始查询	`LOC131019802`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906]; symbol=AT5G01960; hit=AT5G01960; species=arabidopsis; confidence=high
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906]; symbol=AT5G01960; hit=AT5G01960; species=arabidopsis; confidence=high
Arabidopsis	`AT5G01960` (AT5G01960) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906] identity=57.6; qcov=1; evalue=1.01e-159; confidence=high
Rice	`Os01g0168400` - identity=57.9; qcov=0.933; evalue=1.04e-143; confidence=high
GO	GO:0061630 (ubiquitin protein ligase activity); GO:1904294 (positive regulation of ERAD pathway)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5)
InterPro	-
eggNOG	-
NR	GeneID:131019802

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057804374.1`
2	Nucleus membrane	核膜	1.00000	`XP_057804375.1`
3	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057804374.1`
4	Nucleus	细胞核	0.20000	`XP_057804375.1`
5	Chromosome	染色体	0.00000	`XP_057804374.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:15222566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B30,C3,C34,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804374.1

483 aa

242

483

zf-C3HC4_3

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF13920 zf-C3HC4_3 420-463 aa PF13639 zf-RING_2 421-460 aa PF13445 zf-RING_UBOX 422-457 aa PF00097 zf-C3HC4 422-459 aa PF13923 zf-C3HC4_2 422-459 aa PF14634 zf-RING_5 422-460 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804374.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	420	463	1.4e-10	41.5	Zinc finger, C3HC4 type (RING finger)
`XP_057804374.1`	Pfam	`PF13639`	zf-RING_2	Domain	421	460	8.8e-11	42.6	Ring finger domain
`XP_057804374.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	422	457	1.8e-08	34.9	RING-type zinc-finger
`XP_057804374.1`	Pfam	`PF00097`	zf-C3HC4	Domain	422	459	7.2e-10	39.3	Zinc finger, C3HC4 type (RING finger)
`XP_057804374.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	422	459	1.8e-08	34.7	Zinc finger, C3HC4 type (RING finger)
`XP_057804374.1`	Pfam	`PF14634`	zf-RING_5	Domain	422	460	2.5e-07	31.3	zinc-RING finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948391.1
CAATAATGTAGACTGTTGGCGAGAAATAATATGGTAAATAAAAATGGTTAGTTTTGCAAGTGTGTATAAACAGCAGGTGTGATTGTCCGTACCCTTGTTTCTCTCTCTTCTCGCTCGCGCTCCTCCATAGCCAAACAAACAGAGAAGAGAGAGAGGCTTAACAAAGGGAAAACGCGTATTCAACGTCTCGCCGCCGTGATTTTCAACGTTGCCCTCTTCTGATTCTCCGCTGCGGGGCCAACAATACCACCGGTGTCTCC...

XM_057948392.1
GGTAAATAAAAATGGTTAGTTTTGCAAGTGTGTATAAACAGCAGGTGTGATTGTCCGTACCCTTGTTTCTCTCTCTTCTCGCTCGCGCTCCTCCATAGCCAAACAAACAGAGAAGAGAGAGAGGCTTAACAAAGGGAAAACGCGTATTCAACGTCTCGCCGCCGTGATTTTCAACGTTGCCCTCTTCTGATTCTCCGCTGCGGGGCCAACAATACCACCGGTGTCTCCCTGATTTTGTCATCGCGCTATTTGAATATGTC...

CDS

2 records

下载 CDS FASTA

LOC131019802
ATGGAAGCGTCCGGTGGAAATTCGGACGCTTACAGGAGCTCTTCTTCTTCATCAACGTCTTCATTTTCGACTACTTCTAATCATTCCCGAAGAAATGGGCTGCATATTTCTGCTTCCACCATTCTCCGATCGCCCTTGTCCACCTTATTGGAGTACACCGGCTTCCTCAGAACCCGGTCCAGTAATTCGGAATCCGACTCTTTATTGAACAACGGTGCCAACGCCGGCTTGCGGCTGCTTTCAAATGACTCTGCACCTAC...

Protein

2 records

下载 Protein FASTA

XP_057804374.1
MEASGGNSDAYRSSSSSSTSSFSTTSNHSRRNGLHISASTILRSPLSTLLEYTGFLRTRSSNSESDSLLNNGANAGLRLLSNDSAPTPTASSSGSAGEVSIRIIGSAEHDHDRVGTALHSGPSTAQTESFSRPVSRSPSGASVLSSLESQVDLRSDRESVDGASNATNAGGDADGAEGVGTNNRDSSSSYQRYDIQQAARWIEQVLPFSLLLLIVFIRQHLQGFCVTIWIAAFMFKSNDIVRKQTALKGERKITTLIGIV...

XP_057804375.1
MEASGGNSDAYRSSSSSSTSSFSTTSNHSRRNGLHISASTILRSPLSTLLEYTGFLRTRSSNSESDSLLNNGANAGLRLLSNDSAPTPTASSSGSAGEVSIRIIGSAEHDHDRVGTALHSGPSTAQTESFSRPVSRSPSGASVLSSLESQVDLRSDRESVDGASNATNAGGDADGAEGVGTNNRDSSSSYQRYDIQQAARWIEQVLPFSLLLLIVFIRQHLQGFCVTIWIAAFMFKSNDIVRKQTALKGERKITTLIGIV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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