Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001906`

染色体: Chr04 坐标: 31135768-31138516 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001906`
名称	SmilChr04G001906
描述	probable apyrase 7
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	31135768 - 31138516 / `-`

ID 对照

NCBI Gene ID	`LOC131019893`
GeneID	`131019893`
locus_tag	`-`
NCBI Name	`LOC131019893`
原始查询	`LOC131019893`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable apyrase 7
产物	probable apyrase 7
Arabidopsis	`AT4G19180` (AT4G19180) GDA1/CD39 nucleoside phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827656] identity=36; qcov=0.861; evalue=4.5e-73; confidence=medium
Rice	`Os10g0350500` - identity=33.4; qcov=0.947; evalue=7.85e-72; confidence=low
GO	GO:0009134 (nucleoside diphosphate catabolic process); GO:0016020 (membrane); GO:0017110 (nucleoside diphosphate phosphatase activity)
KEGG	-
Pfam	PF01150 (GDA1_CD39)
InterPro	-
eggNOG	-
NR	GeneID:131019893

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057804475.1`
2	Trans-golgi network	Trans-golgi network	0.20000	`XP_057804477.1`
3	Nucleus	细胞核	0.00000	`XP_057804475.1`
4	Chromosome	染色体	0.00000	`XP_057804475.1`
5	Centromere	着丝粒	0.00000	`XP_057804475.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:31135942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,B47
`Chr4:31136002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr4:31136230`	`C`	`CAG`	2bp_insertion	frameshift_variant	1	B99
`Chr4:31136230`	`C`	`CAG`	2bp_insertion	CDS_variant	1	B99
`Chr4:31136308`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,B86
`Chr4:31137284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,C80
`Chr4:31137483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B135,B48,C37
`Chr4:31137734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,C58,C78
`Chr4:31137760`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804475.1

553 aa

276

553

GDA1_CD39

PF01150 GDA1_CD39 55-478 aa

XP_057804476.1

553 aa

276

553

GDA1_CD39

PF01150 GDA1_CD39 55-478 aa

XP_057804477.1

474 aa

237

474

GDA1_CD39

PF01150 GDA1_CD39 20-399 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804475.1`	Pfam	`PF01150`	GDA1_CD39	Family	55	478	1.1e-43	150.2	GDA1/CD39 (nucleoside phosphatase) family
`XP_057804476.1`	Pfam	`PF01150`	GDA1_CD39	Family	55	478	1.1e-43	150.2	GDA1/CD39 (nucleoside phosphatase) family
`XP_057804477.1`	Pfam	`PF01150`	GDA1_CD39	Family	20	399	1.8e-36	126.5	GDA1/CD39 (nucleoside phosphatase) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057948493.1
CTTCAATCATCCGATATATTTTCAAAAGACGGCGCAGATCCGCAATCAGAAAGACGCTGGTATTTCGTCAAACACTCCGCTAATTTGCTCTTAAACTTCATCGATTAATTGATTACTAGTCTGAAGGTTATTCAATCTCGGCTCTTCCTCTGGCCTTGTCGGTGTCATCAATTATGATCATGGGCAGTCAGATGTCGTCACCTCCGATCCCAAGATGTGCTGTGATTTGTTCTGGAGCTGAAAAGGATACAATAGCAAAT...

XM_057948494.1
CGATATATTTTCAAAAGACGGCGCAGATCCGCAATCAGAAAGACGCTGGTATTTCGTCAAACACTCCGCTAATTTGCTCTTAAACTTCATCGATTAATTGATTACTAGTCTGAAGGTTATTCAATCTCGGCTCTTCCTCTGGCCTTGTCGGTGTCATCAATTATGATCATGGGCAGTCAGATGTCGTCACCTCCGATCCCAAGATGTGCTGTGATTTGTTCTGGAGCTGAAAAGGATACAATAGCAAATCAGTTGAAATT...

CDS

3 records

下载 CDS FASTA

LOC131019893
ATGAAGCCAAAGTCGCCATCGAAATCAAAAATCCAAATCGCGGGGTTTTCCAATTCCAACTATCCCAGATTGCGGAAGCTCGTTGCAATCTCCCTTTCGGTAATACTGATTTTAGGTTTAGTTAGCATATATTCAATTTTTAAACATCGCGTTTCAATGTCTGAGAAAACGAGCTCATTTTTCACTGTTGTATTGGACTGTGGAAGCACTGGCTCCAGAGTAAATGTGTTTGAATGGATGATTGGAAATGGGAGTGGGAA...

Protein

3 records

下载 Protein FASTA

XP_057804475.1
MKPKSPSKSKIQIAGFSNSNYPRLRKLVAISLSVILILGLVSIYSIFKHRVSMSEKTSSFFTVVLDCGSTGSRVNVFEWMIGNGSGNLPILLRSYPENVNQSNGCQYHCFQTEPGLHNFVSDTIGVRASLEPLIRYAENWVSLERRGATPLFVLATAAMRRLGAEAAGRVLGDVENVVKEHGFLHRSGWIRVLSGKEEAYYGWVALNYKLGVFGRSSRLPTLGLLDLGGSSLQVVAEGGVPVGEEYAIRSKIGAIAHDLA...

XP_057804476.1
MKPKSPSKSKIQIAGFSNSNYPRLRKLVAISLSVILILGLVSIYSIFKHRVSMSEKTSSFFTVVLDCGSTGSRVNVFEWMIGNGSGNLPILLRSYPENVNQSNGCQYHCFQTEPGLHNFVSDTIGVRASLEPLIRYAENWVSLERRGATPLFVLATAAMRRLGAEAAGRVLGDVENVVKEHGFLHRSGWIRVLSGKEEAYYGWVALNYKLGVFGRSSRLPTLGLLDLGGSSLQVVAEGGVPVGEEYAIRSKIGAIAHDLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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