Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001935`

染色体: Chr04 坐标: 31447301-31451342 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001935`
名称	SmilChr04G001935
描述	anthranilate phosphoribosyltransferase, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	31447301 - 31451342 / `-`

ID 对照

NCBI Gene ID	`LOC131019906`
GeneID	`131019906`
locus_tag	`-`
NCBI Name	`LOC131019906`
原始查询	`LOC131019906`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	anthranilate phosphoribosyltransferase, chloroplastic-like
产物	anthranilate phosphoribosyltransferase%2C chloroplastic-like
Arabidopsis	`AT5G17990` (TRP1) tryptophan biosynthesis 1 [Source:NCBI gene (formerly Entrezgene);Acc:831666] identity=72.9; qcov=0.988; evalue=0; confidence=high
Rice	`Os03g0126000` - identity=71.8; qcov=0.838; evalue=7.84e-167; confidence=high
GO	GO:0000162 (L-tryptophan biosynthetic process); GO:0004048 (anthranilate phosphoribosyltransferase activity); GO:0005829 (cytosol)
KEGG	smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00591 (Glycos_transf_3); PF02885 (Glycos_trans_3N)
InterPro	-
eggNOG	-
NR	GeneID:131019906

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057804512.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057804512.1`
3	Nucleus	细胞核	0.00000	`XP_057804512.1`
4	Chromosome	染色体	0.00000	`XP_057804512.1`
5	Centromere	着丝粒	0.00000	`XP_057804512.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:31447567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:31447677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,A8,B107,C34,C87
`Chr4:31447768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C33
`Chr4:31448421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C68,D7
`Chr4:31448475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B13,B35
`Chr4:31448508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:31450119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:31450553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr4:31450571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C53
`Chr4:31450598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B140,B53,C33,C82
`Chr4:31450915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B53,C82
`Chr4:31450926`	`A`	`AT`	1bp_insertion	frameshift_variant	14	B119,B132,B56,B68,B71,B96,C11,C32,C48,C61,C68,C69,C86,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804512.1

407 aa

204

407

Glycos_trans_3N

Glycos_transf_3

PF02885 Glycos_trans_3N 66-126 aa PF00591 Glycos_transf_3 134-383 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804512.1`	Pfam	`PF02885`	Glycos_trans_3N	Domain	66	126	2e-16	60.2	Glycosyl transferase family, helical bundle domain
`XP_057804512.1`	Pfam	`PF00591`	Glycos_transf_3	Domain	134	383	1.6e-97	326.8	Glycosyl transferase family, a/b domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948529.1
ATGAGGGGGACCATTTTTAAAATTGTGTCAATAAATATTTGATTTTCTAGTATGCAATGCAATTACTGTTTCCATTAATAAGCAATAAATATTACATCTCCTCTAATCAAGAAGGAAATCACGAAGTGAGATATAATCGTCGTCAACTCGCCAAGAGCCAAGAGGGCCTCATCAATCATCGTACGCTGTAGAAAATTTGCAAACCCTAATCAATTCGCATCTACCCTTCCCCCACCGCCCACCTGATCCACATTTCAATC...

CDS

1 records

下载 CDS FASTA

LOC131019906
ATGTCTGCTTCACACCATAGTATTCCATCTCTTTCTCGGTTTCAGTGCTTCTCAGCTGTTCACCACCGTTTTACGCCGCGATACGGGTTCAAGAATCCGAATTTTCGCGCCCCTTTTGGTGTCGAGTGTTCGAATTTTTTGCCGTCTGCTCTGCCGATTTCAAGCAGCCATGCGTCCCCTCTGTCTTCGTTCAGCCAGTTGATTGAGACTTTGATAAGCGGGGTGGATTTATCGGAAGCTGAAGCCGAGGCCTCTCTTGA...

Protein

1 records

下载 Protein FASTA

XP_057804512.1
MSASHHSIPSLSRFQCFSAVHHRFTPRYGFKNPNFRAPFGVECSNFLPSALPISSSHASPLSSFSQLIETLISGVDLSEAEAEASLDFLLDGADEALISAFLVLLRAKGETYEEVVGLARAMVKHCRKVEGLVDAVDIVGTGGDGANTVNISTGASILAAASGARVAKQGNRSSSSACGSADVLEALGVAISLEPEGVRRCVNEAGIGFMMAPIYHPAMKIVRPVRSKLKVKTVFNILGPMLNPARVPFAVVGVYTEDLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器