Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001913`

染色体: Chr04 坐标: 31223803-31225205 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001913`
名称	SmilChr04G001913
描述	glycine cleavage system H protein 3, mitochondrial-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	31223803 - 31225205 / `-`

ID 对照

NCBI Gene ID	`LOC131019921`
GeneID	`131019921`
locus_tag	`-`
NCBI Name	`LOC131019921`
原始查询	`LOC131019921`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycine cleavage system H protein 3, mitochondrial-like
产物	glycine cleavage system H protein 3%2C mitochondrial-like
Arabidopsis	`AT1G32470` (AT1G32470) Single hybrid motif superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840141] identity=79.5; qcov=1.02; evalue=5.38e-87; confidence=high
Rice	`Os10g0516100` (OsGDCH) - identity=73; qcov=1; evalue=8.23e-85; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0005960 (glycine cleavage complex); GO:0009249 (protein lipoylation); GO:0019464 (glycine decarboxylation via glycine cleavage system)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil00785 (Lipoic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01597 (GCV_H)
InterPro	-
eggNOG	-
NR	GeneID:131019921

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057804530.1`
2	Mitochondrion matrix	线粒体基质	0.60000	`XP_057804530.1`
3	Nucleus	细胞核	0.00000	`XP_057804530.1`
4	Chromosome	染色体	0.00000	`XP_057804530.1`
5	Centromere	着丝粒	0.00000	`XP_057804530.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:31224011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr4:31224153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B90,C87
`Chr4:31224249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr4:31224270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B90,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804530.1

163 aa

163

GCV_H

PF01597 GCV_H 39-158 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804530.1`	Pfam	`PF01597`	GCV_H	Domain	39	158	8.7e-50	168.4	Glycine cleavage H-protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948547.1
GAATTTTGTTTTAAAAAAGTATTCGACCATACCTTAATCTATGCACATCTCTCTTAAAGAAAACACAAATTCATTTTTGATGAAATAACATTTTGAAATTGTAATATCAAATAGTAACAATAAACAATATGATTTTTATCGAAACCAACTGGTGTGCGTGAGTCTGAGTTCCAAGGATGAGGCTTTTATTTTCCACCATTCATCAAAGATAATAAACTATTATATTGTAACCCCTCTTCTCTTCCTGCTTTTTTGCACTC...

CDS

1 records

下载 CDS FASTA

LOC131019921
ATGGCACTAAGAATGTGGGCTTCTTCTACAGCAAATGCTCTGAGACTCTCAACTTGTGCTTCTAAATCTCCTGCCTTTTCTCTCTCTAGAGCCTTTTCAACTGTTCTGGAGGATTTGAAGTATGCTTCTTCGCATGAATGGGTGAAGCATGATGGCCCTGTGGCCACCATCGGAATCACAGACCATGCTCAGGACCATTTAGGAGAAGTGGTGTTTGTGGAGCTGCCGGAAGCGGGGAAGGAAGTGAAACAAGGCAGCGG...

Protein

1 records

下载 Protein FASTA

XP_057804530.1
MALRMWASSTANALRLSTCASKSPAFSLSRAFSTVLEDLKYASSHEWVKHDGPVATIGITDHAQDHLGEVVFVELPEAGKEVKQGSGFGAVESVKATSDVNSPISGEVVEVNTKLTESPGLINTSPYEEGWMIKVKPTNPSDLANLMGSKEYTKFCEEEDAAH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器