当前解析结果
SmilChr04G001951| 统一新 Gene ID | SmilChr04G001951 |
|---|---|
| 名称 | SmilChr04G001951 |
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 31707623 - 31710548 / + |
| NCBI Gene ID | LOC131019929 |
|---|---|
| GeneID | 131019929 |
| locus_tag | - |
| NCBI Name | LOC131019929 |
| 原始查询 | LOC131019929 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 1-like |
| 产物 | zinc finger BED domain-containing protein RICESLEEPER 1-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=28.3; qcov=0.945; evalue=4.22e-80; confidence=low |
| Rice | Os03g0733400- identity=31.3; qcov=0.97; evalue=9.51e-99; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019929 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804532.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804532.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804532.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804532.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804532.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:31708180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C4 |
Chr4:31708211 |
CAA |
C |
2bp_deletion | frameshift_variant | 17 | A19,A3,A9,B105,B109,B111,B133,B28,B32,B60,B74,C20,C4,C73,C82,C83,D8 |
Chr4:31708258 |
GA |
G |
1bp_deletion | frameshift_variant | 39 | A20,A22,A5,B1,B114,B120,B122,B123,B126,B131,B21,B42,B43,B48,B51,B52,B54,B58,B60,B66,B67,B78,B82,B88,B93,C25,C31,C36,C46,C48,C49,C73,C74,C75,C76,C8,C84,D10,D5 |
Chr4:31708393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:31708480 |
TGC |
T |
2bp_deletion | frameshift_variant | 34 | A14,A7,B10,B106,B109,B113,B134,B34,B37,B41,B45,B5,B61,B73,B80,B83,B87,B94,B97,C12,C15,C20,C24,C26,C28,C3,C51,C61,C64,C77,C81,C83,D1,D9 |
Chr4:31708486 |
C |
T |
EMS_canonical_SNV | stop_gained | 52 | A16,A20,A22,A4,A5,B1,B110,B114,B120,B122,B126,B131,B132,B2,B22,B42,B43,B48,B51,B52,B54,B58,B62,B66,B67,B7,B76,B78,B82,B85,B88,B93,B95,C19,C25,C30,C31,C35,C36,C39,C45,C49,C50,C53,C73,C74,C76,C8,C82,C84,D10,D5 |
Chr4:31708515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr4:31708701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr4:31708711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B62,B85,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804532.1PF27041
ZBED1_RNase-like 196-291 aa
PF27039
ZBED1_RNase-like_helical 294-402 aa
PF14372
hAT-like_RNase-H 432-515 aa
PF05699
Dimer_Tnp_hAT 559-647 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804532.1 |
Pfam | PF27041 |
ZBED1_RNase-like | Domain | 196 | 291 | 1.9e-29 | 102.3 | ZBED1 RNase-like domain |
XP_057804532.1 |
Pfam | PF27039 |
ZBED1_RNase-like_helical | Domain | 294 | 402 | 4.5e-33 | 114.3 | ZBED1 RNase-like helical domain |
XP_057804532.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 432 | 515 | 2.1e-21 | 76.7 | hAT-like transposase, RNase-H fold |
XP_057804532.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 559 | 647 | 2.5e-17 | 63.1 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。