Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001996`

染色体: Chr04 坐标: 32298865-32303458 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001996`
名称	SmilChr04G001996
描述	1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	32298865 - 32303458 / `-`

ID 对照

NCBI Gene ID	`LOC131019962`
GeneID	`131019962`
locus_tag	`-`
NCBI Name	`LOC131019962`
原始查询	`LOC131019962`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic
产物	1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C chloroplastic
Arabidopsis	`AT5G62790` (DXR) 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Source:NCBI gene (formerly Entrezgene);Acc:836400] identity=82.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0106900` (OsDXR) - identity=83; qcov=1; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0008299 (isoprenoid biosynthetic process); GO:0030145 (manganese ion binding); GO:0030604 (1-deoxy-D-xylulose-5-phosphate reductoisomerase activity); GO:0051484 (GO:0051484); GO:0070402 (NADPH binding)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02670 (DXP_reductoisom); PF08436 (DXP_redisom_C); PF13288 (DXPR_C)
InterPro	-
eggNOG	-
NR	GeneID:131019962

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057804583.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057804583.1`
3	Nucleus	细胞核	0.00000	`XP_057804583.1`
4	Chromosome	染色体	0.00000	`XP_057804583.1`
5	Centromere	着丝粒	0.00000	`XP_057804583.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:32299140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B65,B77,C67
`Chr4:32299193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr4:32299199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:32299220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B34,B58,C7,C76
`Chr4:32299241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:32299702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,C42
`Chr4:32299902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr4:32299914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B38,B39,C13,C57
`Chr4:32300146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,C42
`Chr4:32300409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,A8,C65
`Chr4:32300959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr4:32301389`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804583.1

474 aa

237

474

DXP_reductoisom

DXP_redisom_C

DXPR_C

PF02670 DXP_reductoisom 81-209 aa PF08436 DXP_redisom_C 223-306 aa PF13288 DXPR_C 338-459 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804583.1`	Pfam	`PF02670`	DXP_reductoisom	Family	81	209	2.8e-48	164.5	1-deoxy-D-xylulose 5-phosphate reductoisomerase
`XP_057804583.1`	Pfam	`PF08436`	DXP_redisom_C	Domain	223	306	2.5e-38	130.8	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
`XP_057804583.1`	Pfam	`PF13288`	DXPR_C	Domain	338	459	1.8e-36	125.6	DXP reductoisomerase C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948600.1
AAAATCTAGCCTTAATGATAATTTATGGTGAATATTGTATACTAAATCTGCATGAAGTATTAAATCCTAGAAATTGATGTCATTTTCATTTTAAATTTTCACGGCCGAATCCTTATAAAATAGAGCCCAACAGTCATTATTATTGTACACAATCTCCCTCCTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTCATTAGTTTGTTAGTTTGCCATCCTTGACCAGCTCGAA...

CDS

1 records

下载 CDS FASTA

LOC131019962
ATGGCTCTAAACTTGATGTCTCCAACTGAAATCAAGACGCTGTCTTTCTTGGATTCCTCCAAATCGAATTACAATCTCAATCCTCTCAAGTTTCAAGGTGGATTTGCTTTCAAGAGGAAGGATAGTAGATGCACTGCTTCAAAGAGAGTCCATTGCTCGGCACAACCTCCTCCTCCTCCGGCTTGGCCCGGACGGGCTGTTGCTGAGCCCGGTCGTATGACTTGGGAGGGCCCGAAGCCCATTTCGGTTATTGGATCCAC...

Protein

1 records

下载 Protein FASTA

XP_057804583.1
MALNLMSPTEIKTLSFLDSSKSNYNLNPLKFQGGFAFKRKDSRCTASKRVHCSAQPPPPPAWPGRAVAEPGRMTWEGPKPISVIGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVRAFKPKLVSVRDESLVSELKEALADFEDKPEIIPGEQGMIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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