Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001631`

染色体: Chr04 坐标: 27053956-27055208 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001631`
名称	SmilChr04G001631
描述	uncharacterized SmilChr04G001631
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27053956 - 27055208 / `-`

ID 对照

NCBI Gene ID	`LOC131020060`
GeneID	`131020060`
locus_tag	`-`
NCBI Name	`LOC131020060`
原始查询	`LOC131020060`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nucleic acid binding / zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:816302]; symbol=AT2G17920; hit=AT2G17920; species=arabidopsis; confidence=weak
产物	nucleic acid binding / zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:816302]; symbol=AT2G17920; hit=AT2G17920; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G17920` (AT2G17920) nucleic acid binding / zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:816302] identity=36.4; qcov=0.299; evalue=5.52e-08; confidence=weak
Rice	`Os12g0156200` - identity=36.9; qcov=0.294; evalue=2.28e-06; confidence=weak
GO	-
KEGG	-
Pfam	PF14392 (zf-CCHC_4)
InterPro	-
eggNOG	-
NR	GeneID:131020060

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804684.1`
2	Cytoplasm	细胞质	0.20000	`XP_057804684.1`
3	Chromosome	染色体	0.00000	`XP_057804684.1`
4	Centromere	着丝粒	0.00000	`XP_057804684.1`
5	Chromatin	染色质	0.00000	`XP_057804684.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27054071`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B12,D7
`Chr4:27054071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,D7
`Chr4:27054077`	`G`	`A`	EMS_canonical_SNV	stop_gained	48	A1,A23,A24,A4,B101,B120,B127,B128,B139,B23,B26,B3,B35,B37,B42,B43,B52,B62,B64,B68,B69,B71,B9,C11,C16,C17,C18,C21,C22,C27,C29,C30,C31,C32,C36,C40,C44,C45,C46,C48,C53,C54,C61,C68,C69,C74,C86,D5
`Chr4:27054096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,C85
`Chr4:27054100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B7,B77,C4
`Chr4:27054101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:27054103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,C80
`Chr4:27054116`	`G`	`A`	EMS_canonical_SNV	stop_gained	40	A10,A16,A20,A25,A9,B1,B103,B111,B115,B12,B130,B16,B21,B22,B4,B48,B50,B55,B60,B74,B76,B77,B78,B80,B82,B95,B98,C10,C19,C20,C35,C39,C5,C54,C57,C6,C67,C72,C73,D8
`Chr4:27054119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87
`Chr4:27054135`	`G`	`GA`	1bp_insertion	frameshift_variant	29	A2,A3,B119,B137,B25,B28,B33,B54,B6,B66,B7,B70,B84,C1,C10,C11,C13,C21,C33,C41,C42,C58,C65,C67,C69,C7,C71,C78,C79
`Chr4:27054149`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:27054158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B27,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804684.1

221 aa

110

221

zf-CCHC_4

PF14392 zf-CCHC_4 9-54 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804684.1`	Pfam	`PF14392`	zf-CCHC_4	Domain	9	54	1.9e-18	66.6	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948701.1
TTGAGATCCCTCGCTCTGTGCTTATTTTTCTGGTTTTTCCTGACTTTACCACCCCCATGGAAGATCAAATGGCCGAACTAAACTTATCCACCGAAGATGATGAAATCCTACTCGACGACGATGCTACTGGAGATTCCACGGTTGATGTCGATCTTTGTCTGGTAGGCCGGGAAAGGAGTCTTCGTGAAGGATATCGGCCAGGGACGCTTTATCTTTCAATTTTTCCACGAGATTGATGTGAAAAGGGTCTACGAAGGCGG...

CDS

1 records

下载 CDS FASTA

LOC131020060
ATGCGTGTCAGGGTGGGGATACGTGTCTCGGAACCTCTCAAACGTTTCAAAAGGATCAAGCAAAAAGAGGGCTCATCCTTCGTTGTCAACTTCAGATATGAGAGGCTGAATATTTTTTGTTTTCTCTGCGGGAGACTTGGACACTCAGAACACTTTTGCGACCTCAGGTTCAATACCGATACCAAGGATAAGGAAAGGGAATGGGGTATCTGGCTTAAGACTGCGGACCGGCGTGGCGTGAATTTAGCCGGAGATAAGTG...

Protein

1 records

下载 Protein FASTA

XP_057804684.1
MRVRVGIRVSEPLKRFKRIKQKEGSSFVVNFRYERLNIFCFLCGRLGHSEHFCDLRFNTDTKDKEREWGIWLKTADRRGVNLAGDKWLRTKDVSGNPSTEAAAARVPHTPSRSELKRKEQENRDLIIPNNNSLNEEDIIPPFPQRLQLQEICHANHARVSMQIDDNSLSGFDERKQRRGADSAFLITNPTSDVFPTGFPEDGSDEQLYLTAGPGVGVGRSQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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