当前解析结果
SmilChr04G001635| 统一新 Gene ID | SmilChr04G001635 |
|---|---|
| 名称 | SmilChr04G001635 |
| 描述 | alpha-soluble NSF attachment protein-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 27126264 - 27131089 / + |
| NCBI Gene ID | LOC131020064 |
|---|---|
| GeneID | 131020064 |
| locus_tag | - |
| NCBI Name | LOC131020064 |
| 原始查询 | LOC131020064 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha-soluble NSF attachment protein-like |
| 产物 | alpha-soluble NSF attachment protein-like |
| Arabidopsis | AT3G56190 (ALPHA-SNAP2)alpha-soluble NSF attachment protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:824785] identity=74.4; qcov=1; evalue=2.69e-150; confidence=high |
| Rice | Os08g0282400- identity=68.5; qcov=1; evalue=4.48e-148; confidence=high |
| GO | GO:0005483 (soluble NSF attachment protein activity); GO:0005774 (vacuolar membrane); GO:0006886 (intracellular protein transport); GO:0019905 (syntaxin binding); GO:0031201 (SNARE complex); GO:0035494 (SNARE complex disassembly) |
| KEGG | - |
| Pfam | PF14938 (SNAP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020064 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057804691.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057804691.1 |
| 3 | Vesicle | 囊泡 | 0.80000 | XP_057804691.1 |
| 4 | Midbody | Midbody | 0.80000 | XP_057804691.1 |
| 5 | Nucleoplasm | 核质 | 0.40000 | XP_057804691.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:27126508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:27127536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr4:27127813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:27128201 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B37 |
Chr4:27128201 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B37 |
Chr4:27129210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
Chr4:27129694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,C57,D7 |
Chr4:27129719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B140,B75,C16,C62,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804691.1PF14938
SNAP 7-278 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804691.1 |
Pfam | PF14938 |
SNAP | Repeat | 7 | 278 | 7.4e-111 | 370.9 | Soluble NSF attachment protein, SNAP |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。