Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001695`

染色体: Chr01 坐标: 31201668-31202735 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001695`
名称	SmilChr01G001695
描述	RING-H2 finger protein ATL57
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	31201668 - 31202735 / `-`

ID 对照

NCBI Gene ID	`LOC131020071`
GeneID	`131020071`
locus_tag	`-`
NCBI Name	`LOC131020071`
原始查询	`LOC131020071`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING-H2 finger protein ATL57
产物	RING-H2 finger protein ATL57
Arabidopsis	`AT2G27940` (AT2G27940) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817338] identity=49.5; qcov=0.733; evalue=4.21e-42; confidence=medium
Rice	`Os09g0468300` - identity=43.6; qcov=0.558; evalue=1.31e-31; confidence=medium
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131020071

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057804713.1`
2	Cell membrane	细胞膜	0.20000	`XP_057804713.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057804713.1`
4	Vacuole	液泡	0.20000	`XP_057804713.1`
5	Nucleus	细胞核	0.00000	`XP_057804713.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:31201703`	`AAT`	`A`	2bp_deletion	frameshift_variant	35	A1,A15,A8,B101,B19,B30,B40,B56,B58,B62,B76,B9,B91,B96,B98,B99,C1,C12,C19,C21,C26,C27,C35,C38,C48,C5,C50,C52,C55,C57,C73,C79,C81,C83,D11
`Chr1:31201714`	`AT`	`A`	1bp_deletion	frameshift_variant	102	A10,A14,A18,A19,A23,A25,A5,A9,B1,B10,B101,B102,B103,B105,B106,B107,B108,B111,B113,B119,B120,B122,B129,B13,B131,B132,B134,B136,B138,B139,B15,B2,B22,B29,B31,B32,B34,B4,B40,B41,B42,B43,B45,B46,B47,B49,B5,B51,B52,B53,B57,B61,B64,B70,B71,B73,B74,B76,B77,B87,B9,B93,B94,B95,B97,B98,C13,C20,C21,C22,C25,C3,C30,C32,C33,C34,C36,C37,C44,C46,C49,C51,C56,C58,C61,C62,C63,C67,C68,C7,C71,C72,C76,C77,C8,C80,C82,C87,D10,D11,D8,D9
`Chr1:31201744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,B6,C47
`Chr1:31201759`	`C`	`CCA`	2bp_insertion	frameshift_variant	168	A1,A11,A14,A15,A16,A2,A20,A21,A23,A3,A4,A5,A7,A8,A9,B10,B100,B101,B102,B104,B105,B108,B109,B111,B112,B114,B117,B119,B12,B121,B122,B123,B124,B125,B126,B127,B13,B130,B133,B135,B14,B140,B16,B17,B18,B19,B2,B20,B23,B24,B25,B27,B28,B3,B30,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B44,B45,B47,B50,B55,B56,B57,B58,B59,B60,B61,B62,B63,B66,B67,B69,B70,B71,B74,B75,B76,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B93,B94,B96,B98,B99,C1,C10,C12,C13,C14,C15,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C31,C33,C35,C36,C38,C39,C40,C41,C42,C43,C44,C48,C49,C5,C50,C51,C54,C55,C57,C60,C63,C65,C7,C70,C71,C73,C75,C78,C79,C80,C81,C83,C84,C85,C86,C87,C9,D10,D11,D2,D3,D4,D6,D7
`Chr1:31201775`	`GAC`	`G`	2bp_deletion	frameshift_variant	2	B35,D9
`Chr1:31201775`	`GAC`	`G`	2bp_deletion	CDS_variant	2	B35,D9
`Chr1:31201777`	`C`	`CA`	1bp_insertion	frameshift_variant	4	A16,B15,B6,C47
`Chr1:31201777`	`C`	`CA`	1bp_insertion	CDS_variant	4	A16,B15,B6,C47
`Chr1:31201785`	`A`	`AC`	1bp_insertion	frameshift_variant	153	A11,A13,A14,A15,A16,A2,A20,A21,A23,A3,A4,A5,A6,A7,A9,B10,B100,B102,B104,B105,B106,B108,B109,B111,B112,B114,B115,B119,B12,B121,B122,B124,B126,B127,B128,B129,B13,B130,B133,B135,B14,B140,B16,B17,B18,B2,B20,B23,B24,B25,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B41,B44,B45,B47,B50,B54,B55,B56,B57,B59,B60,B61,B63,B65,B66,B67,B69,B70,B71,B73,B74,B75,B80,B81,B82,B83,B86,B88,B89,B90,B91,B93,B94,B96,B99,C10,C11,C13,C14,C15,C17,C18,C19,C2,C20,C22,C23,C24,C25,C26,C27,C28,C3,C31,C33,C38,C39,C40,C42,C43,C44,C47,C48,C49,C51,C53,C54,C55,C60,C63,C65,C7,C70,C71,C75,C78,C79,C80,C84,C85,C86,C87,C9,D10,D11,D2,D6,D7,D8,D9
`Chr1:31201832`	`TGC`	`T`	2bp_deletion	frameshift_variant	193	A1,A11,A13,A14,A15,A16,A18,A2,A20,A21,A23,A3,A4,A5,A6,A8,A9,B10,B100,B101,B102,B104,B105,B106,B107,B108,B109,B111,B112,B114,B115,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B133,B135,B136,B14,B140,B15,B16,B17,B18,B19,B2,B20,B23,B24,B25,B27,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B44,B45,B47,B48,B50,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B70,B71,B73,B74,B75,B76,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B98,B99,C1,C10,C11,C12,C13,C14,C15,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C31,C33,C35,C38,C39,C4,C40,C41,C42,C43,C44,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C57,C60,C63,C65,C69,C7,C70,C71,C73,C75,C78,C79,C8,C80,C81,C83,C84,C85,C86,C87,C9,D10,D11,D2,D3,D6,D7,D8,D9
`Chr1:31201867`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:31202161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804713.1

251 aa

126

251

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4_2

zf-RING_UBOX

zf-C3HC4

PF12678 zf-rbx1 118-167 aa PF13639 zf-RING_2 123-167 aa PF17123 zf-RING_11 124-153 aa PF13923 zf-C3HC4_2 124-166 aa PF13445 zf-RING_UBOX 125-164 aa PF00097 zf-C3HC4 125-166 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804713.1`	Pfam	`PF12678`	zf-rbx1	Domain	118	167	1.2e-10	42.1	RING-H2 zinc finger domain
`XP_057804713.1`	Pfam	`PF13639`	zf-RING_2	Domain	123	167	2e-15	57.5	Ring finger domain
`XP_057804713.1`	Pfam	`PF17123`	zf-RING_11	Domain	124	153	4.2e-09	36.7	RING-like zinc finger
`XP_057804713.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	124	166	2.9e-09	37.3	Zinc finger, C3HC4 type (RING finger)
`XP_057804713.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	125	164	2.8e-07	31.1	RING-type zinc-finger
`XP_057804713.1`	Pfam	`PF00097`	zf-C3HC4	Domain	125	166	6.9e-08	32.9	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948730.1
GAAAAAATATAAGCAATAATTCCCTTGAAAATGATAATTTTCAAAATTCGTCCAGTTAAAGACCTTATCATGATGAACAACCCCCCTTCCCCAGTTTCGCTTTCACCCAAACCTACAAATTGATTTTACAGACATCCTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTATATATACATGTTTACATTAGAGTATATAGAATTTCTTTCTTTCTCTCAATCATCCAGATCATTTGTGGTGATGATTTCAACCG...

CDS

1 records

下载 CDS FASTA

LOC131020071
ATGAGTCGAATTTCAACCATAATAATCTCTAGAAGATTCCTGCAAACATCGGACTTAGACGCTTTCAATGGCATTCCACGAAATCCTCTCTCCCCACTCGCCGCCGGCAATAACACCGTCGCCGCCAGAAGACCGCCAGCGGAACCGACTCCCGCCTTCGACTCCTCCATGGCCCTAACAATCCTGGTCCTCCTCACCGCCCTTTTCTTCCTTGGCTTCTTCTCCGTCTACATCCGCCGCTTCGCCGCCGCCGCTCCCCC...

Protein

1 records

下载 Protein FASTA

XP_057804713.1
MSRISTIIISRRFLQTSDLDAFNGIPRNPLSPLAAGNNTVAARRPPAEPTPAFDSSMALTILVLLTALFFLGFFSVYIRRFAAAAPPPPPAASRKGGGGLDSSAVDSLPLVAYGGAAKHRMIDECPICLSEFSERETVKLIPYCGHVFHPSCIDTWLASHVTCPLCRSAELFQICLDVAPDINDSRAPERSTLAGVRRASSSSNLPAIMHFYTEAQVFDLILLVFVSFLCVEKADLLFFHIFLHKKFYSIY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器