Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001652`

染色体: Chr04 坐标: 27478703-27485411 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001652`
名称	SmilChr04G001652
描述	U-box domain-containing protein 35-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27478703 - 27485411 / `+`

ID 对照

NCBI Gene ID	`LOC131020083`
GeneID	`131020083`
locus_tag	`-`
NCBI Name	`LOC131020083`
原始查询	`LOC131020083`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	U-box domain-containing protein 35-like
产物	U-box domain-containing protein 35-like
Arabidopsis	`AT4G25160` (AT4G25160) U-box domain-containing protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828619] identity=53.1; qcov=1.03; evalue=0; confidence=high
Rice	`Os06g0140800` (OsPUB51) - identity=52.8; qcov=0.996; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0004842 (ubiquitin-protein transferase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF00069 (Pkinase); PF04564 (U-box); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131020083

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057804719.1`
2	Cytosol	细胞质基质	0.60000	`XP_057804719.1`
3	Cytoplasm	细胞质	0.20000	`XP_057804719.1`
4	Nucleus	细胞核	0.00000	`XP_057804719.1`
5	Chromosome	染色体	0.00000	`XP_057804719.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27480008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B58,B66,B99,C2
`Chr4:27480517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr4:27480544`	`A`	`AC`	1bp_insertion	frameshift_variant	183	A1,A10,A11,A13,A15,A16,A18,A2,A20,A21,A22,A23,A24,A25,A3,A5,A9,B1,B100,B101,B102,B104,B105,B107,B11,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B124,B125,B126,B128,B129,B13,B130,B131,B132,B135,B137,B138,B140,B16,B18,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B35,B36,B38,B39,B4,B41,B42,B43,B46,B47,B48,B49,B51,B53,B54,B55,B57,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B70,B71,B72,B75,B77,B78,B79,B8,B81,B82,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B98,B99,C1,C10,C11,C13,C14,C16,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C29,C30,C31,C32,C33,C34,C37,C40,C41,C42,C43,C44,C47,C48,C49,C5,C52,C53,C54,C55,C57,C58,C59,C6,C61,C62,C65,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C79,C8,C82,C84,C86,C87,C9,D11,D2,D3,D5,D6,D8
`Chr4:27480615`	`TC`	`T`	1bp_deletion	frameshift_variant	182	A1,A10,A11,A13,A15,A16,A18,A2,A20,A21,A22,A23,A24,A25,A3,A5,A9,B1,B100,B101,B102,B104,B105,B107,B11,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B124,B125,B126,B128,B129,B13,B130,B131,B132,B135,B137,B138,B140,B16,B18,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B35,B36,B38,B39,B4,B41,B42,B43,B46,B47,B48,B49,B51,B53,B54,B55,B57,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B70,B71,B72,B75,B77,B78,B79,B8,B81,B82,B84,B85,B86,B87,B88,B89,B9,B90,B91,B93,B94,B98,B99,C1,C10,C11,C13,C14,C16,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C29,C30,C31,C32,C33,C34,C37,C40,C41,C42,C43,C44,C47,C48,C49,C5,C52,C53,C54,C55,C57,C58,C59,C6,C61,C62,C65,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C79,C8,C82,C84,C86,C87,C9,D11,D2,D3,D5,D6,D8
`Chr4:27480617`	`C`	`CG`	1bp_insertion	frameshift_variant	180	A1,A10,A11,A13,A15,A16,A18,A2,A20,A21,A22,A23,A24,A25,A3,A5,A9,B1,B100,B101,B102,B104,B105,B107,B11,B112,B114,B115,B117,B118,B119,B12,B120,B121,B124,B125,B126,B128,B13,B130,B131,B132,B135,B137,B138,B140,B16,B18,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B35,B36,B38,B39,B4,B41,B42,B43,B46,B47,B48,B49,B51,B53,B54,B55,B57,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B70,B71,B72,B75,B77,B78,B79,B8,B81,B82,B84,B85,B86,B87,B89,B9,B90,B91,B92,B93,B94,B98,B99,C1,C10,C11,C13,C14,C16,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C29,C30,C31,C32,C33,C34,C37,C40,C41,C42,C43,C44,C47,C48,C49,C5,C52,C53,C54,C55,C57,C58,C59,C6,C61,C62,C65,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C77,C78,C79,C8,C82,C84,C86,C87,C9,D11,D2,D3,D5,D6,D8
`Chr4:27481362`	`TA`	`T`	1bp_deletion	frameshift_variant	59	A1,A11,A15,A18,A21,A22,A24,A5,B105,B112,B117,B119,B120,B121,B125,B129,B13,B132,B138,B23,B38,B39,B41,B46,B48,B55,B61,B62,B63,B67,B69,B72,B85,B88,B89,B9,C11,C13,C16,C18,C26,C29,C32,C37,C41,C43,C47,C5,C53,C55,C62,C68,C69,C72,C75,C9,D11,D2,D3
`Chr4:27481366`	`A`	`AG`	1bp_insertion	frameshift_variant	56	A1,A11,A15,A18,A21,A22,A24,A5,B112,B117,B119,B120,B121,B129,B13,B132,B138,B23,B38,B39,B41,B46,B48,B55,B61,B62,B63,B67,B69,B72,B85,B88,B89,B9,C11,C13,C16,C18,C26,C29,C32,C41,C43,C47,C5,C53,C55,C62,C68,C69,C72,C75,C9,D11,D2,D3
`Chr4:27483090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr4:27483258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,C73
`Chr4:27483266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr4:27483274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B58,B66,B99,C2
`Chr4:27483394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C30,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804719.1

802 aa

401

802

Pkinase

PK_Tyr_Ser-Thr

U-box

PF00069 Pkinase 449-659 aa PF07714 PK_Tyr_Ser-Thr 452-703 aa PF04564 U-box 732-801 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804719.1`	Pfam	`PF00069`	Pkinase	Domain	449	659	2.4e-35	122.9	Protein kinase domain
`XP_057804719.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	452	703	1.6e-37	129.9	Protein tyrosine and serine/threonine kinase
`XP_057804719.1`	Pfam	`PF04564`	U-box	Domain	732	801	1.3e-19	70.9	U-box domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948736.1
ACAAAATGAATGGTATGCAATTTATTAATTTATACATTTTTGTTTGAGATTATTTTTCAAGGTAATAAAGTGCATACATTTTCTGGGAGTCAAGATTTATATGATGTTCTTGTTTGCATCTGAGAAATCTGAAGAAATTCTCAAGATAACTGTAATCTGTATTTTAGCAGGAATTTGGATACTTGGTTTGAACTATGTCCTTGGATGTCTCTGTTTTTAACATTCTTTGACCTAATTGAACGATGTGGCAGAAGAATAAA...

CDS

1 records

下载 CDS FASTA

LOC131020083
ATGGAAGAGAAAAGTAGAAAAAGAGTAGAAGGATTGGATGAATTGCCACCACCAGCATATTCAGTTGTTGCAGTGGCTATAAGTGGAAGTAGAAAAACCAAACATGTAATCAGCTGGGCACTGGATAAATTTGTTCCAGAAGGATTGGTTTACTTTAAGTTGCTGCATGTCCGCCCTCTTGTATCGAGTATCCCAACACCAATGGGTAATTTTATTCCAATTTCTCAAGTTCGAGATGATGTAGCAGCTGCGTATAAGAA...

Protein

1 records

下载 Protein FASTA

XP_057804719.1
MEEKSRKRVEGLDELPPPAYSVVAVAISGSRKTKHVISWALDKFVPEGLVYFKLLHVRPLVSSIPTPMGNFIPISQVRDDVAAAYKKEMEWQTAEKLLPCKKMCSQRKVQVEIVQIESDDVVTAISGEIQKHKINKLVIGASSRSIFSRARTLSSKISECCPTFCTVYAVSKGKLSSLRPSDSETNQSFRDDSSDTSSDXNSSSISSSSQTDIGRDQGSFAHFRSASLPMQRFQALSTINLTLLHKRMPSSGVMDPRNLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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