Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001655`

染色体: Chr04 坐标: 27523668-27532116 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001655`
名称	SmilChr04G001655
描述	uncharacterized SmilChr04G001655
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27523668 - 27532116 / `+`

ID 对照

NCBI Gene ID	`LOC131020086`
GeneID	`131020086`
locus_tag	`-`
NCBI Name	`LOC131020086`
原始查询	`LOC131020086`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=25.1; qcov=0.711; evalue=7.27e-08; confidence=low
Rice	`-` -
GO	-
KEGG	-
Pfam	PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131020086

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804723.1`
2	Cytoplasm	细胞质	0.80000	`XP_057804723.1`
3	Cytosol	细胞质基质	0.20000	`XP_057804723.1`
4	Chromosome	染色体	0.00000	`XP_057804723.1`
5	Centromere	着丝粒	0.00000	`XP_057804723.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27530689`	`GGA`	`G`	2bp_deletion	frameshift_variant	9	A21,A25,B106,B138,B40,B59,C24,C26,C50
`Chr4:27530978`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B104
`Chr4:27530978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:27530989`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B104
`Chr4:27530989`	`TG`	`T`	1bp_deletion	CDS_variant	1	B104
`Chr4:27530993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,C30,C42,C66,C84
`Chr4:27531013`	`G`	`GGA`	2bp_insertion	frameshift_variant	19	B104,B114,B133,B135,B136,B139,B28,B55,B6,C28,C30,C32,C44,C57,C63,C66,C68,C84,D7
`Chr4:27531014`	`ATT`	`A`	2bp_deletion	frameshift_variant	19	B104,B114,B133,B135,B136,B139,B28,B55,B6,C28,C30,C32,C44,C57,C63,C66,C68,C84,D7
`Chr4:27531081`	`CT`	`C`	1bp_deletion	frameshift_variant	11	B133,B135,B136,B28,B55,B6,C28,C57,C63,C68,D2
`Chr4:27531088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr4:27531198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:27531201`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804723.1

454 aa

227

454

FBA_3

FBA_1

PF08268 FBA_3 107-368 aa PF07734 FBA_1 147-316 aa

XP_057804724.1

454 aa

227

454

FBA_3

FBA_1

PF08268 FBA_3 107-368 aa PF07734 FBA_1 147-316 aa

XP_057804725.1

454 aa

227

454

FBA_3

FBA_1

PF08268 FBA_3 107-368 aa PF07734 FBA_1 147-316 aa

XP_057804726.1

454 aa

227

454

FBA_3

FBA_1

PF08268 FBA_3 107-368 aa PF07734 FBA_1 147-316 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804723.1`	Pfam	`PF08268`	FBA_3	Repeat	107	368	2.9e-16	60.1	F-box associated beta propeller domain
`XP_057804723.1`	Pfam	`PF07734`	FBA_1	Repeat	147	316	1e-17	64.9	F-box associated beta propeller domain
`XP_057804724.1`	Pfam	`PF08268`	FBA_3	Repeat	107	368	2.9e-16	60.1	F-box associated beta propeller domain
`XP_057804724.1`	Pfam	`PF07734`	FBA_1	Repeat	147	316	1e-17	64.9	F-box associated beta propeller domain
`XP_057804725.1`	Pfam	`PF08268`	FBA_3	Repeat	107	368	2.9e-16	60.1	F-box associated beta propeller domain
`XP_057804725.1`	Pfam	`PF07734`	FBA_1	Repeat	147	316	1e-17	64.9	F-box associated beta propeller domain
`XP_057804726.1`	Pfam	`PF08268`	FBA_3	Repeat	107	368	2.9e-16	60.1	F-box associated beta propeller domain
`XP_057804726.1`	Pfam	`PF07734`	FBA_1	Repeat	147	316	1e-17	64.9	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057948743.1
GTGATTTATGTCTTTTCTTGTCACTACAATCTGTCTGCCTTTTTCACTCTCTCTCGCTCGCTCTCTCTCTCTGCCGTCCGCTGGTCGCCTGCGGCCACGGCCTCGCTTCCTAGGACCTCTCCATCCAAGCGCTGCGACCTGCAAGAGCCAAGCAGGCAGCACAACAGCAGTGCGCCCCCAAGCCCTCGCCGGCTCGCCCCGTCCCATCTCCTTCGATCGACAGCCCACCGCCCTCACCTAGCCTTTCCCGGATCCGCTTC...

XM_057948740.1
ACGCACCAACTCACGCACACAACAGCAACACACACGCACACGGTACACACATGCACACACCCCTTTCTACCGGCTTCCCAGCGTCGCCCTCGAACGGCCGCGCCGTCGCCGGAGACGGGCTGCCCTGCCTCTTCACTCTCCCTCGTCTCTCAGTCCCTTCTATATCTCCTGGCCGTGCCCAGCCGCGGCCGTGCCCCCTCCTCCTTCTCCGGCGACCTTCCCCGCCTGCTACTCTCTCTACTGCCCGGCATCAACGCTGT...

CDS

4 records

下载 CDS FASTA

LOC131020086
ATGGCTGCACGCGTCGCCACCTCCGCTGCCAAGCGCTGCCTTCCGATGTTTCCTTCTCTCTATTGCCAACATGTTCGATCTAGCAATTGTTTCTTGGGCCCCAGAATCGGAACCCTAATTCAACAGACCAGCAGAGAGTGGGAAAGTAGGAAGGGGGGTTCGACGAGAATCTATGGTGCCGCACCTTATTGGAAAAAGCTTGTGCCCCTAGGTAATGAGGCAATTGTTCCCTGCATAACCGAGACAAAACATACGTCTTC...

Protein

4 records

下载 Protein FASTA

XP_057804723.1
MAARVATSAAKRCLPMFPSLYCQHVRSSNCFLGPRIGTLIQQTSREWESRKGGSTRIYGAAPYWKKLVPLGNEAIVPCITETKHTSSYGLSDHLFPYSMPKPYIYIVYPDEHKYMYFSAHSVEEDGTISSSPKYYIYPPSPLKETCFFTGISCNGLLHFQNEQYDDFLWNPTTNEFKALPNSSSCDHQQPRGLRVTNYKIGCGMWSDNRCADNYKMLHLVLADTEKVEEEVEEENSISIDLSYHIHLYSLKTNSWKKIPC...

XP_057804724.1
MAARVATSAAKRCLPMFPSLYCQHVRSSNCFLGPRIGTLIQQTSREWESRKGGSTRIYGAAPYWKKLVPLGNEAIVPCITETKHTSSYGLSDHLFPYSMPKPYIYIVYPDEHKYMYFSAHSVEEDGTISSSPKYYIYPPSPLKETCFFTGISCNGLLHFQNEQYDDFLWNPTTNEFKALPNSSSCDHQQPRGLRVTNYKIGCGMWSDNRCADNYKMLHLVLADTEKVEEEVEEENSISIDLSYHIHLYSLKTNSWKKIPC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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