当前解析结果
SmilChr04G002930| 统一新 Gene ID | SmilChr04G002930 |
|---|---|
| 名称 | SmilChr04G002930 |
| 描述 | uncharacterized protein At1g65710-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 45572433 - 45574424 / + |
| NCBI Gene ID | LOC131020095 |
|---|---|
| GeneID | 131020095 |
| locus_tag | - |
| NCBI Name | LOC131020095 |
| 原始查询 | LOC131020095 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/arginine repetitive matrix-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842882]; symbol=AT1G65710; hit=AT1G65710; species=arabidopsis; confidence=medium |
| 产物 | serine/arginine repetitive matrix-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842882]; symbol=AT1G65710; hit=AT1G65710; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G65710 (AT1G65710)serine/arginine repetitive matrix-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842882] identity=44.4; qcov=0.962; evalue=1.47e-72; confidence=medium |
| Rice | Os04g0528600 (OSJNBa0074L08.7)- identity=37.5; qcov=1.11; evalue=6.4e-65; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF30950 (At1g65710) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020095 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057804738.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057804738.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057804738.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057804738.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804738.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:45572873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B57,B88,C49 |
Chr4:45572985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr4:45573039 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C17 |
Chr4:45573039 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C17 |
Chr4:45573094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,C80 |
Chr4:45573131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:45573279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B31,B41,B8,C51 |
Chr4:45573427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B103,C4,C41 |
Chr4:45573445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B126,C80 |
Chr4:45573456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C13 |
Chr4:45573487 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:45573699 |
G |
GCA |
2bp_insertion | frameshift_variant | 135 | A11,A13,A14,A15,A19,A2,A22,A4,A6,A7,A8,B10,B102,B104,B105,B107,B109,B11,B110,B112,B115,B118,B121,B122,B123,B125,B129,B130,B131,B132,B133,B136,B137,B138,B14,B16,B17,B18,B19,B2,B22,B24,B25,B32,B35,B37,B38,B39,B4,B40,B45,B47,B49,B5,B50,B51,B54,B55,B59,B6,B61,B62,B63,B65,B7,B71,B72,B73,B76,B81,B82,B83,B84,B86,B89,B9,B90,B91,B92,B94,B95,B99,C11,C14,C15,C18,C20,C21,C22,C23,C24,C25,C27,C29,C32,C34,C39,C4,C40,C43,C45,C46,C47,C48,C50,C52,C53,C58,C59,C60,C61,C62,C67,C68,C69,C7,C71,C72,C75,C76,C78,C79,C8,C81,C82,C83,C84,C86,C87,D1,D11,D2,D3,D5,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804738.1PF30950
At1g65710 1-460 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804738.1 |
Pfam | PF30950 |
At1g65710 | Domain | 1 | 460 | 1.4e-164 | 549.2 | At1g65710-like |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。