Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003196`

染色体: Chr04 坐标: 48794563-48799573 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003196`
名称	SmilChr04G003196
描述	putative lipid phosphate phosphatase 3, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	48794563 - 48799573 / `+`

ID 对照

NCBI Gene ID	`LOC131020100`
GeneID	`131020100`
locus_tag	`-`
NCBI Name	`LOC131020100`
原始查询	`LOC131020100`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative lipid phosphate phosphatase 3, chloroplastic
产物	putative lipid phosphate phosphatase 3%2C chloroplastic
Arabidopsis	`AT3G02600` (LPP3) lipid phosphate phosphatase 3 [Source:NCBI gene (formerly Entrezgene);Acc:821299] identity=62.1; qcov=1.03; evalue=8.26e-146; confidence=high
Rice	`Os01g0139600` - identity=56.4; qcov=0.981; evalue=8.62e-133; confidence=high
GO	GO:0006644 (phospholipid metabolic process); GO:0008195 (phosphatidate phosphatase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01569 (PAP2)
InterPro	-
eggNOG	-
NR	GeneID:131020100

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.60000	`XP_057804744.1`
2	Cell membrane	细胞膜	0.60000	`XP_057804746.1`
3	Vacuole	液泡	0.40000	`XP_057804742.1`
4	Endoplasmic reticulum	内质网	0.40000	`XP_057804744.1`
5	Vacuole membrane	液泡膜	0.40000	`XP_057804742.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:48795518`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B103
`Chr4:48795537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:48795584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:48795643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr4:48796426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr4:48797861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:48797896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr4:48797903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B81,C87
`Chr4:48797904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr4:48798931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,A21
`Chr4:48799111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B117,B38,B39,C13
`Chr4:48799298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804741.1

394 aa

197

394

PAP2

PF01569 PAP2 185-329 aa

XP_057804742.1

385 aa

192

385

PAP2

PF01569 PAP2 184-320 aa

XP_057804743.1

360 aa

180

360

PAP2

PF01569 PAP2 151-295 aa

XP_057804744.1

352 aa

176

352

PAP2

PF01569 PAP2 185-329 aa

XP_057804745.1

351 aa

176

351

PAP2

PF01569 PAP2 150-286 aa

XP_057804746.1

309 aa

154

309

PAP2

PF01569 PAP2 100-244 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804741.1`	Pfam	`PF01569`	PAP2	Family	185	329	1.3e-31	109.8	PAP2 superfamily
`XP_057804742.1`	Pfam	`PF01569`	PAP2	Family	184	320	3.8e-29	101.8	PAP2 superfamily
`XP_057804743.1`	Pfam	`PF01569`	PAP2	Family	151	295	1e-31	110.1	PAP2 superfamily
`XP_057804744.1`	Pfam	`PF01569`	PAP2	Family	185	329	9.1e-32	110.3	PAP2 superfamily
`XP_057804745.1`	Pfam	`PF01569`	PAP2	Family	150	286	3.1e-29	102.1	PAP2 superfamily
`XP_057804746.1`	Pfam	`PF01569`	PAP2	Family	100	244	7e-32	110.6	PAP2 superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057948761.1
AAAATCGCCCAAATTTCCAAAATCCTGAAAATCAAAAACCTTTTCACATCTCTTCCCTTCAACTTTCTCTCACTACTCCTTCTCTCTTCACAAGTATAAAAGGAGGGAAAATGAGTTGAACATAATTGAATTCAGTCTCGCGGCCAATTAATCCCCTTGCGGTCGGAGCAGGATTTTTCAGATCGCGGTGGCGCAGCCTCTCTCAGATCTAAGCTGCGGAATCGGAAATTGGTATTGAATTTTTCGACAGCGGGTTGATA...

XM_057948758.1
AAAATCGCCCAAATTTCCAAAATCCTGAAAATCAAAAACCTTTTCACATCTCTTCCCTTCAACTTTCTCTCACTACTCCTTCTCTCTTCACAAGTATAAAAGGAGGGAAAATGAGTTGAACATAATTGAATTCAGTCTCGCGGCCAATTAATCCCCTTGCGGTCGGAGCAGGATTTTTCAGATCGCGGTGGCGCAGCCTCTCTCAGATCTAAGCTGCGGAATCGGAAATTGGTATTGAATTTTTCGACAGCGGGTTGATA...

CDS

6 records

下载 CDS FASTA

LOC131020100
ATGCAACGAAACATCGGATTATCCACGTGGCCGCTGCAGCGCACGACATCTCACACACACGCAGTTCTTATTTCGGCTGTGAATCTTGAAAGCCACCGATCACCAAAACCTTTAGGCTACTCGCTTTCAACGTCAAATTGCTCAACTAAAATCAGGCTCTTTCAAAAGAGGCGGAATAATACTTCCGCGAGCACCGGTGATAGGTTTTCTCAACTTGACTTCCCTTTGATAGGCTCCAAGGCCCACCAGAGTGAAATGTG...

Protein

6 records

下载 Protein FASTA

XP_057804741.1
MQRNIGLSTWPLQRTTSHTHAVLISAVNLESHRSPKPLGYSLSTSNCSTKIRLFQKRRNNTSASTGDRFSQLDFPLIGSKAHQSEMWDARDVAHTVRSHGVRLARTHMHDWLILVLLGSIIVGLNIIHPFYRFVGKDMMSDLKYPHKSNTVPFWVVVLSAVPLPILVFLLFYLRQRDVYDLHAAILGLLFSVLITGVITDAIKDAVGRPRPDFFWRCFPDGKDAYDRWGNVVCHGDEHVIRQGHKSFPSGHTSWAFAGLG...

XP_057804742.1
MQRNIGLSTWPLQRTTSHTHAVLISAVNLESHRSPKPLGYSLSTSNCSTKIRLFQKRRNNTSASTGDRFSQLDFPLIGSKAHQSEMWDARDVAHTVRSHGVRLARTHMHDWLILVLLGSIIVGLNIIHPFYRFVGKDMMSDLKYPHKSNTVPFWVVVLSAVPLPILVFLLFYLRQRDVYDLHAAILGVITDAIKDAVGRPRPDFFWRCFPDGKDAYDRWGNVVCHGDEHVIRQGHKSFPSGHTSWAFAGLGFLSLYISGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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