当前解析结果
SmilChr04G003201| 统一新 Gene ID | SmilChr04G003201 |
|---|---|
| 名称 | SmilChr04G003201 |
| 描述 | cell cycle checkpoint protein RAD17-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 48847447 - 48854214 / - |
| NCBI Gene ID | LOC131020101 |
|---|---|
| GeneID | 131020101 |
| locus_tag | - |
| NCBI Name | LOC131020101 |
| 原始查询 | LOC131020101 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell cycle checkpoint protein RAD17-like |
| 产物 | cell cycle checkpoint protein RAD17-like |
| Arabidopsis | AT5G66130 (ATRAD17)RADIATION SENSITIVE 17 [Source:NCBI gene (formerly Entrezgene);Acc:836745] identity=53.6; qcov=0.973; evalue=0; confidence=high |
| Rice | Os03g0242100- identity=46.1; qcov=0.936; evalue=6.1e-150; confidence=high |
| GO | GO:0000077 (DNA damage checkpoint signaling); GO:0003682 (chromatin binding); GO:0006281 (DNA repair); GO:0033314 (mitotic DNA replication checkpoint signaling) |
| KEGG | - |
| Pfam | PF03215 (Rad17); PF21960 (RCF1-5-like_lid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020101 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804747.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057804750.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057804750.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804747.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804747.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:48847740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B40,C44,C52 |
Chr4:48847767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr4:48848559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,D11 |
Chr4:48849147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B22,B28 |
Chr4:48849734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr4:48850099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B103,B87,C36 |
Chr4:48850162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A3,B46 |
Chr4:48850243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C78,D9 |
Chr4:48852136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr4:48852993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr4:48854091 |
A |
AAT |
2bp_insertion | frameshift_variant | 6 | A21,B122,B20,B33,B41,D7 |
Chr4:48854094 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | B117 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804747.1PF03215
Rad17 152-318 aa
PF21960
RCF1-5-like_lid 361-397 aa
XP_057804748.1PF03215
Rad17 152-318 aa
PF21960
RCF1-5-like_lid 361-397 aa
XP_057804749.1PF03215
Rad17 93-259 aa
PF21960
RCF1-5-like_lid 302-338 aa
XP_057804750.1PF03215
Rad17 35-201 aa
PF21960
RCF1-5-like_lid 244-280 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804747.1 |
Pfam | PF03215 |
Rad17 | Domain | 152 | 318 | 1.6e-21 | 77.8 | Rad17 P-loop domain |
XP_057804747.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 361 | 397 | 2.3e-06 | 28.2 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057804748.1 |
Pfam | PF03215 |
Rad17 | Domain | 152 | 318 | 1.6e-21 | 77.8 | Rad17 P-loop domain |
XP_057804748.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 361 | 397 | 2.3e-06 | 28.2 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057804749.1 |
Pfam | PF03215 |
Rad17 | Domain | 93 | 259 | 1.3e-21 | 78.1 | Rad17 P-loop domain |
XP_057804749.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 302 | 338 | 2e-06 | 28.4 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057804750.1 |
Pfam | PF03215 |
Rad17 | Domain | 35 | 201 | 1.2e-21 | 78.3 | Rad17 P-loop domain |
XP_057804750.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 244 | 280 | 1.7e-06 | 28.6 | RCF1/5-like, AAA+ ATPase lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。