Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003208`

染色体: Chr04 坐标: 48936328-48941246 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003208`
名称	SmilChr04G003208
描述	probable prolyl 4-hydroxylase 10
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	48936328 - 48941246 / `+`

ID 对照

NCBI Gene ID	`LOC131020107`
GeneID	`131020107`
locus_tag	`-`
NCBI Name	`LOC131020107`
原始查询	`LOC131020107`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable prolyl 4-hydroxylase 10
产物	probable prolyl 4-hydroxylase 10
Arabidopsis	`AT5G66060` (AT5G66060) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836738] identity=72.2; qcov=1.01; evalue=2.09e-159; confidence=high
Rice	`Os10g0497800` - identity=75.6; qcov=0.751; evalue=7.95e-124; confidence=high
GO	GO:0004656 (procollagen-proline 4-dioxygenase activity); GO:0005506 (iron ion binding); GO:0005783 (endoplasmic reticulum); GO:0018401 (peptidyl-proline hydroxylation to 4-hydroxy-L-proline); GO:0031418 (L-ascorbic acid binding)
KEGG	smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF03171 (2OG-FeII_Oxy); PF13640 (2OG-FeII_Oxy_3)
InterPro	-
eggNOG	-
NR	GeneID:131020107

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057804762.1`
2	Nucleus	细胞核	0.00000	`XP_057804762.1`
3	Chromosome	染色体	0.00000	`XP_057804762.1`
4	Centromere	着丝粒	0.00000	`XP_057804762.1`
5	Chromatin	染色质	0.00000	`XP_057804762.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:48936788`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B57,B88
`Chr4:48937621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B136,C50,C56
`Chr4:48937646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,C80,D3,D7
`Chr4:48938812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B72,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804762.1

289 aa

144

289

2OG-FeII_Oxy

2OG-FeII_Oxy_3

PF03171 2OG-FeII_Oxy 163-283 aa PF13640 2OG-FeII_Oxy_3 165-283 aa

XP_057804763.1

289 aa

144

289

2OG-FeII_Oxy

2OG-FeII_Oxy_3

PF03171 2OG-FeII_Oxy 163-283 aa PF13640 2OG-FeII_Oxy_3 165-283 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804762.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	163	283	1.5e-09	38.7	2OG-Fe(II) oxygenase superfamily
`XP_057804762.1`	Pfam	`PF13640`	2OG-FeII_Oxy_3	Domain	165	283	1.9e-19	71.1	2OG-Fe(II) oxygenase superfamily
`XP_057804763.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	163	283	1.5e-09	38.7	2OG-Fe(II) oxygenase superfamily
`XP_057804763.1`	Pfam	`PF13640`	2OG-FeII_Oxy_3	Domain	165	283	1.9e-19	71.1	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948780.1
TAGACGCAACACCCAAGAAAATGTCAACTCAAATTTGTAAGTTTTTTTGAAAGACTGTCTGTGAAAATAGATTTGTTTACAAACATTAGGTTCCTGATATCGATCTTTAGTAAATAGCGTTAAATGTTAATATGACTTTCTAGTTACTTTAGATTTTTAAATAAAAAGTATTGAAAAAAATTTACATAGCCATACACGACACGATATTAAATTAGTGAGAGTTAGATTAGTTCCCCTAAAAAAAACAAGAAAAACAAAAA...

XM_057948779.1
TAGACGCAACACCCAAGAAAATGTCAACTCAAATTTGTAAGTTTTTTTGAAAGACTGTCTGTGAAAATAGATTTGTTTACAAACATTAGGTTCCTGATATCGATCTTTAGTAAATAGCGTTAAATGTTAATATGACTTTCTAGTTACTTTAGATTTTTAAATAAAAAGTATTGAAAAAAATTTACATAGCCATACACGACACGATATTAAATTAGTGAGAGTTAGATTAGTTCCCCTAAAAAAAACAAGAAAAACAAAAA...

CDS

2 records

下载 CDS FASTA

LOC131020107
ATGGCAGGGAAGGGGCGCCAGCACTACAGTAGCGCGCCGCGGCGGAAGACGGCGTCGTCCACGTTGCTCCTCTACGGGCTCATAATGTTGTCATTGCTGATTGTCATCATTTTGGCTTTCGGAATGTTATCCAGCAGCAGCAATTCAAAGCATAAAGCGCATGACCTCAGCGTCATTGCTCACAATTCATTGCACTCACATGATGGAGATGAGGAGAACAAGGATCAATGGGTTGAAGTTATTTCCTGGGAGCCGAGAGC...

Protein

2 records

下载 Protein FASTA

XP_057804762.1
MAGKGRQHYSSAPRRKTASSTLLLYGLIMLSLLIVIILAFGMLSSSSNSKHKAHDLSVIAHNSLHSHDGDEENKDQWVEVISWEPRASIFHHFLSKEECEYLISIAQPHMEKSTVVDGETGKSMDSRVRTSYGTFLARGRDKIVQRIEKRLADFTFLPVEHGEGLQVLHYEPGQKYEPHYDYFLDEHNTQNGGQRIATVLMYLSDVEEGGETVFPAAKGNFSSVPYWNELSECGKGGLSVKPKMGDALLFWSMKPDATLD...

XP_057804763.1
MAGKGRQHYSSAPRRKTASSTLLLYGLIMLSLLIVIILAFGMLSSSSNSKHKAHDLSVIAHNSLHSHDGDEENKDQWVEVISWEPRASIFHHFLSKEECEYLISIAQPHMEKSTVVDGETGKSMDSRVRTSYGTFLARGRDKIVQRIEKRLADFTFLPVEHGEGLQVLHYEPGQKYEPHYDYFLDEHNTQNGGQRIATVLMYLSDVEEGGETVFPAAKGNFSSVPYWNELSECGKGGLSVKPKMGDALLFWSMKPDATLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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