Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003242`

染色体: Chr04 坐标: 49203075-49209290 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003242`
名称	SmilChr04G003242
描述	uncharacterized SmilChr04G003242
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	49203075 - 49209290 / `+`

ID 对照

NCBI Gene ID	`LOC131020144`
GeneID	`131020144`
locus_tag	`-`
NCBI Name	`LOC131020144`
原始查询	`LOC131020144`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683]; symbol=AT1G73480; hit=AT1G73480; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683]; symbol=AT1G73480; hit=AT1G73480; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73480` (AT1G73480) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843683] identity=59.2; qcov=0.928; evalue=4.01e-138; confidence=high
Rice	`Os09g0394700` - identity=63.1; qcov=0.6; evalue=1.07e-95; confidence=high
GO	GO:0016020 (membrane); GO:0016298 (lipase activity)
KEGG	smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131020144

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.60000	`XP_057804812.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057804812.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057804812.1`
4	Nucleus	细胞核	0.00000	`XP_057804812.1`
5	Chromosome	染色体	0.00000	`XP_057804812.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804812.1

461 aa

230

461

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 207-445 aa PF00561 Abhydrolase_1 211-443 aa PF12697 Abhydrolase_6 212-438 aa

XP_057804813.1

375 aa

188

375

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 207-375 aa PF00561 Abhydrolase_1 211-341 aa PF12697 Abhydrolase_6 212-358 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804812.1`	Pfam	`PF12146`	Hydrolase_4	Domain	207	445	2.5e-77	260.1	Serine aminopeptidase, S33
`XP_057804812.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	211	443	1.4e-19	71.5	alpha/beta hydrolase fold
`XP_057804812.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	212	438	1.8e-15	58.9	Alpha/beta hydrolase family
`XP_057804813.1`	Pfam	`PF12146`	Hydrolase_4	Domain	207	375	4.8e-49	167.5	Serine aminopeptidase, S33
`XP_057804813.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	211	341	4.5e-16	60.0	alpha/beta hydrolase fold
`XP_057804813.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	212	358	5.4e-12	47.5	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948830.1
TTTTTTCGGCCCCAAAAACAGAAATCAATTTCCATTTCGATTTTTCCCCTTCATTCATATCCGAATCTATTATTTTCACCTCTTCAATTTCCTCTGCATTTTTTTCAGGAGGAATTTTTGTAAAGCTGTGTTTTTGTTTACTTACCCCTTGTTTTTACCTTCTGCAATCGTTAGAATATCTGAAAATTCTTTACCAGCTTTTGTGGGTTGCTAATTTTGCGGCAATATCTCCCCAATTTTCTGGTATATGATTTGCTCGG...

XM_057948829.1
TTTTTCGGCCCCAAAAACAGAAATCAATTTCCATTTCGATTTTTCCCCTTCATTCATATCCGAATCTATTATTTTCACCTCTTCAATTTCCTCTGCATTTTTTTCAGGAGGAATTTTTGTAAAGCTGTGTTTTTGTTTACTTACCCCTTGTTTTTACCTTCTGCAATCGTTAGAATATCTGAAAATTCTTTACCAGCTTTTGTGGGTTGCTAATTTTGCGGCAATATCTCCCCAATTTTCTGGTATATGATTTGCTCGGC...

CDS

2 records

下载 CDS FASTA

LOC131020144
ATGATTTGCTCGGCATTTCCGAAACCTAGAATTTCAATTCCAAATGAGCGTGTTTTCCGATCAAATATTAGCGCAATCTTAATTCCGAGATTAAAATTCAACAAAGTTCCATTAATCACGAAAACGTGTTATCTCAAACCGCCGAAGCTGATATCCGTTAAAACCGGAATGATGACGAAAGCAAGCGACGGAGCCACCGTAATGCTGACCTCAGGCGCGAGCGGGAGAATCAATGCGCTGCTGTCTCTACGCGCGTTGAG...

Protein

2 records

下载 Protein FASTA

XP_057804812.1
MICSAFPKPRISIPNERVFRSNISAILIPRLKFNKVPLITKTCYLKPPKLISVKTGMMTKASDGATVMLTSGASGRINALLSLRALRSVLRLISAFFLILLLPFRGRKRCAAVGAAPESPEKGGGKEEKALATTGKVVTVPAAMVPMKSVAAVVDKDVAARRALAIKRVEEDNGGGDNEGTARAYSLFITSRGDTIFTQSWTPVVVQVRGLVVLLHGLNEHSGRYDAFAKKLNANGFKVYGMDWIGHGGSDGLHAYVHSL...

XP_057804813.1
MICSAFPKPRISIPNERVFRSNISAILIPRLKFNKVPLITKTCYLKPPKLISVKTGMMTKASDGATVMLTSGASGRINALLSLRALRSVLRLISAFFLILLLPFRGRKRCAAVGAAPESPEKGGGKEEKALATTGKVVTVPAAMVPMKSVAAVVDKDVAARRALAIKRVEEDNGGGDNEGTARAYSLFITSRGDTIFTQSWTPVVVQVRGLVVLLHGLNEHSGRYDAFAKKLNANGFKVYGMDWIGHGGSDGLHAYVHSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器