当前解析结果
SmilChr01G001760| 统一新 Gene ID | SmilChr01G001760 |
|---|---|
| 名称 | SmilChr01G001760 |
| 描述 | ATP-dependent RNA helicase DEAH13-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 32311263 - 32317860 / + |
| NCBI Gene ID | LOC131020191 |
|---|---|
| GeneID | 131020191 |
| locus_tag | - |
| NCBI Name | LOC131020191 |
| 原始查询 | LOC131020191 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent RNA helicase DEAH13-like |
| 产物 | ATP-dependent RNA helicase DEAH13-like |
| Arabidopsis | AT1G33390 (FAS4)RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840232] identity=53.9; qcov=0.993; evalue=0; confidence=high |
| Rice | Os02g0736600- identity=51.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure); GO:0005730 (nucleolus) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF21010 (HA2_C); PF23362 (DHX37_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020191 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804870.1 |
| 2 | Nucleolus | 核仁 | 0.20000 | XP_057804870.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804870.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804870.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804870.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:32311739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:32312377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr1:32312412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B51,C33 |
Chr1:32312447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B99,C26 |
Chr1:32312455 |
G |
GTT |
2bp_insertion | frameshift_variant | 244 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C58,C59,C6,C60,C61,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr1:32312457 |
AAG |
A |
2bp_deletion | frameshift_variant | 244 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B4,B40,B41,B42,B43,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B55,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C58,C59,C6,C60,C61,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr1:32312530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:32312838 |
GAA |
G |
2bp_deletion | frameshift_variant | 1 | B88 |
Chr1:32312838 |
GAA |
G |
2bp_deletion | CDS_variant | 1 | B88 |
Chr1:32312996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C73 |
Chr1:32313165 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr1:32313340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804870.1PF00270
DEAD 254-432 aa
PF00271
Helicase_C 671-760 aa
PF04408
WHD_HA2 822-849 aa
PF21010
HA2_C 852-954 aa
PF07717
OB_NTP_bind 1040-1127 aa
PF23362
DHX37_C 1195-1274 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804870.1 |
Pfam | PF00270 |
DEAD | Domain | 254 | 432 | 7.8e-08 | 32.9 | DEAD/DEAH box helicase |
XP_057804870.1 |
Pfam | PF00271 |
Helicase_C | Domain | 671 | 760 | 1.2e-11 | 45.6 | Helicase conserved C-terminal domain |
XP_057804870.1 |
Pfam | PF04408 |
WHD_HA2 | Domain | 822 | 849 | 1.4e-09 | 38.5 | Helicase associated domain (HA2), winged-helix |
XP_057804870.1 |
Pfam | PF21010 |
HA2_C | Domain | 852 | 954 | 8.9e-09 | 36.5 | Helicase associated domain (HA2), ratchet-like |
XP_057804870.1 |
Pfam | PF07717 |
OB_NTP_bind | Domain | 1040 | 1127 | 3.1e-15 | 56.8 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
XP_057804870.1 |
Pfam | PF23362 |
DHX37_C | Domain | 1195 | 1274 | 5.5e-15 | 55.7 | DEAH helicase DHX37 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。