Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001763`

染色体: Chr01 坐标: 32414855-32420349 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001763`
名称	SmilChr01G001763
描述	ATP-dependent RNA helicase DEAH13-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	32414855 - 32420349 / `+`

ID 对照

NCBI Gene ID	`LOC131020200`
GeneID	`131020200`
locus_tag	`-`
NCBI Name	`LOC131020200`
原始查询	`LOC131020200`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent RNA helicase DEAH13-like
产物	ATP-dependent RNA helicase DEAH13-like
Arabidopsis	`AT1G33390` (FAS4) RNA helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840232] identity=59.1; qcov=0.922; evalue=0; confidence=high
Rice	`Os02g0736600` - identity=54.6; qcov=0.972; evalue=0; confidence=high
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0005524 (ATP binding); GO:0005622 (intracellular anatomical structure); GO:0005730 (nucleolus); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04408 (WHD_HA2); PF07717 (OB_NTP_bind); PF21010 (HA2_C); PF23362 (DHX37_C)
InterPro	-
eggNOG	-
NR	GeneID:131020200

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804881.1`
2	Nucleolus	核仁	0.20000	`XP_057804881.1`
3	Cytoplasm	细胞质	0.20000	`XP_057804881.1`
4	Chromosome	染色体	0.00000	`XP_057804881.1`
5	Centromere	着丝粒	0.00000	`XP_057804881.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:32415032`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B69,B73,D2
`Chr1:32415057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B16,B18,B57,B66
`Chr1:32415097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:32416307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B121,B122
`Chr1:32416384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr1:32416550`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A14,C33
`Chr1:32416652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,B12,B131,B82
`Chr1:32416687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B69,B89,C14
`Chr1:32416841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B47
`Chr1:32416852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr1:32416858`	`C`	`CTG`	2bp_insertion	frameshift_variant	45	A10,A25,B103,B109,B110,B113,B123,B128,B139,B14,B18,B20,B28,B34,B37,B42,B44,B48,B5,B55,B60,B64,B69,B75,B85,B86,B9,B90,B92,B94,C11,C24,C26,C37,C46,C48,C5,C50,C52,C63,C67,C69,C87,D1,D8
`Chr1:32416859`	`CAA`	`C`	2bp_deletion	frameshift_variant	48	A10,A25,B103,B109,B110,B113,B123,B128,B139,B14,B15,B18,B20,B28,B34,B37,B42,B44,B48,B5,B55,B60,B64,B69,B75,B85,B86,B9,B90,B92,B94,B95,C11,C20,C24,C26,C37,C46,C48,C5,C50,C52,C63,C67,C69,C87,D1,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804881.1

1141 aa

570

1141

DEAD

Helicase_C

WHD_HA2

HA2_C

OB_NTP_bind

DHX37_C

PF00270 DEAD 98-276 aa PF00271 Helicase_C 515-604 aa PF04408 WHD_HA2 666-693 aa PF21010 HA2_C 696-798 aa PF07717 OB_NTP_bind 884-971 aa PF23362 DHX37_C 1039-1118 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804881.1`	Pfam	`PF00270`	DEAD	Domain	98	276	6.7e-08	33.2	DEAD/DEAH box helicase
`XP_057804881.1`	Pfam	`PF00271`	Helicase_C	Domain	515	604	1.9e-11	44.9	Helicase conserved C-terminal domain
`XP_057804881.1`	Pfam	`PF04408`	WHD_HA2	Domain	666	693	1.2e-09	38.7	Helicase associated domain (HA2), winged-helix
`XP_057804881.1`	Pfam	`PF21010`	HA2_C	Domain	696	798	2.5e-10	41.4	Helicase associated domain (HA2), ratchet-like
`XP_057804881.1`	Pfam	`PF07717`	OB_NTP_bind	Domain	884	971	2.7e-15	57.0	Oligonucleotide/oligosaccharide-binding (OB)-fold
`XP_057804881.1`	Pfam	`PF23362`	DHX37_C	Domain	1039	1118	3.3e-13	50.0	DEAH helicase DHX37 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948898.1
AAGCGGGTTTGGAACTGCCACATGCTGAAAAGGCTCACACTAAGAGGAAAAGAGATAATGCATCTCAAGATATTGATATTGAAGTTTATGAAGACGAAATCTGTAAGCCATCTACCGATGTGCATTCTGATACCAATATGCAATCAACGCACGATGAACCTGATACCTCTGATAGACGAGTTGGTGGTTCATTTGAAGAAGTGGCTAATGACGATACTCAACCATCACTGCTAGGATCTGAGGAAAAATCTACCAGGTCA...

CDS

1 records

下载 CDS FASTA

LOC131020200
ATGCAATCAACGCACGATGAACCTGATACCTCTGATAGACGAGTTGGTGGTTCATTTGAAGAAGTGGCTAATGACGATACTCAACCATCACTGCTAGGATCTGAGGAAAAATCTACCAGGTCATGCCAAATTGAAGAAATAATTAGGCCTAAGAATTACAATCCTGAAGGCGAAAATAACCATAGCAACTGTACTTCTTTAAGAAATCTTGTTGCTCCAACAGTGGTACATGTCTCAAGACCCAAGGATGTTGAAAAGCT...

Protein

1 records

下载 Protein FASTA

XP_057804881.1
MQSTHDEPDTSDRRVGGSFEEVANDDTQPSLLGSEEKSTRSCQIEEIIRPKNYNPEGENNHSNCTSLRNLVAPTVVHVSRPKDVEKLRMGLPIVMMEQEIMEAINENISLIICGETGCGKTTQVPQFLYEAGFGSRHSNTGGGIIGVTQPRRVAVLATAKRVAFELGLRLGREVGFQVRHDRKVGENCSIKFMTDGILLREVQNDFLLKRYSVLILDEAHERSLNTDILIGMLSRVIQERQREYEMQENRILAGETIECE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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