Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003305`

染色体: Chr04 坐标: 49780891-49785434 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003305`
名称	SmilChr04G003305
描述	long chain base biosynthesis protein 2a-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	49780891 - 49785434 / `+`

ID 对照

NCBI Gene ID	`LOC131020204`
GeneID	`131020204`
locus_tag	`-`
NCBI Name	`LOC131020204`
原始查询	`LOC131020204`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	long chain base biosynthesis protein 2a-like
产物	long chain base biosynthesis protein 2a-like
Arabidopsis	`AT5G23670` (LCB2) long chain base2 [Source:NCBI gene (formerly Entrezgene);Acc:832432] identity=83.4; qcov=1; evalue=0; confidence=high
Rice	`Os11g0516000` (OsLCB2a3) - identity=85.5; qcov=0.973; evalue=0; confidence=high
GO	GO:0004758 (serine C-palmitoyltransferase activity); GO:0017059 (serine palmitoyltransferase complex); GO:0030170 (pyridoxal phosphate binding); GO:0046512 (sphingosine biosynthetic process); GO:0046513 (ceramide biosynthetic process)
KEGG	smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2); PF01041 (DegT_DnrJ_EryC1); PF01212 (Beta_elim_lyase)
InterPro	-
eggNOG	-
NR	GeneID:131020204

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057804882.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057804882.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057804882.1`
4	Peroxisome membrane	过氧化物酶体膜	0.20000	`XP_057804882.1`
5	Nucleus	细胞核	0.00000	`XP_057804882.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:49782402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B90,B92,C87
`Chr4:49782877`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr4:49784003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B63,C12,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804882.1

488 aa

244

488

Aminotran_1_2

DegT_DnrJ_EryC1

Beta_elim_lyase

PF00155 Aminotran_1_2 101-458 aa PF01041 DegT_DnrJ_EryC1 147-292 aa PF01212 Beta_elim_lyase 147-328 aa

XP_057804883.1

488 aa

244

488

Aminotran_1_2

DegT_DnrJ_EryC1

Beta_elim_lyase

PF00155 Aminotran_1_2 101-458 aa PF01041 DegT_DnrJ_EryC1 147-292 aa PF01212 Beta_elim_lyase 147-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804882.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	101	458	2.2e-52	179.2	Aminotransferase class I and II
`XP_057804882.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	147	292	9.9e-06	25.7	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057804882.1`	Pfam	`PF01212`	Beta_elim_lyase	Domain	147	328	1.8e-07	31.5	Beta-eliminating lyase
`XP_057804883.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	101	458	2.2e-52	179.2	Aminotransferase class I and II
`XP_057804883.1`	Pfam	`PF01041`	DegT_DnrJ_EryC1	Domain	147	292	9.9e-06	25.7	DegT/DnrJ/EryC1/StrS aminotransferase family
`XP_057804883.1`	Pfam	`PF01212`	Beta_elim_lyase	Domain	147	328	1.8e-07	31.5	Beta-eliminating lyase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948899.1
TGAAAGCAAAAATAGTGCAAGTAGAAGATGTTTTCCCCGAATCTCTCTTAATTACGCCATATTTATAAATAAAAAAATTCCACACCTCAGATCGCACAATCAAACGGGAAAGGCAATTAGTTAGGAAACGAAGAAAAATAGATAAAATTAAAAAAGTAAACGTGAAAAAGTGAAGAGAGGGGGGAGCGAGTCAAACTCAATCCTCTCCCACCATTCTTTCCCCTCTCCCTCTCTCTCTCTCCATTGGGATCTCCTCTGCC...

XM_057948900.1
AAGCAAAAATAGTGCAAGTAGAAGATGTTTTCCCCGAATCTCTCTTAATTACGCCATATTTATAAATAAAAAAATTCCACACCTCAGATCGCACAATCAAACGGGAAAGGCAATTAGTTAGGAAACGAAGAAAAATAGATAAAATTAAAAAAGTAAACGTGAAAAAGTGAAGAGAGGGGGGAGCGAGTCAAACTCAATCCTCTCCCACCATTCTTTCCCCTCTCCCTCTCTCTCTCTCCATTGGGATCTCCTCTGCCTCT...

CDS

2 records

下载 CDS FASTA

LOC131020204
ATGATCATCCCCTATCTCACCGCTTTAACCACCTACTTCAGCTATGGCCTACTCTTCGCCTTCGGCCAGCTGCGCGATTTTTTCCGCAAGACTGTCGATTGGTGGTCTGCTAGCACCCTACAGGGCTATGCGCCGATCTGCTTGGGGCTTGAGGATTTCTACATTCGCCGGCTGTATTTGAGAATTCAGGACTGCTTCAACAGACCAATATCAAGCCCCCCGGATGCTTGGTTTGATGTGGTGGAGCGCGTCTCCAATGA...

Protein

2 records

下载 Protein FASTA

XP_057804882.1
MIIPYLTALTTYFSYGLLFAFGQLRDFFRKTVDWWSASTLQGYAPICLGLEDFYIRRLYLRIQDCFNRPISSPPDAWFDVVERVSNDNNKTLKRTTRVNRCLNLGSYNYLGFAAADEYCTPRVIESLKKYTPSTCSTRVDGGTTKLHAELEECVANFVGKPAAIVFGMGYVTNSAILPVLIGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNTPSHLENVLREQIADGQPRTHRPWKKIIVVVEGIYSMEGELCKLPE...

XP_057804883.1
MIIPYLTALTTYFSYGLLFAFGQLRDFFRKTVDWWSASTLQGYAPICLGLEDFYIRRLYLRIQDCFNRPISSPPDAWFDVVERVSNDNNKTLKRTTRVNRCLNLGSYNYLGFAAADEYCTPRVIESLKKYTPSTCSTRVDGGTTKLHAELEECVANFVGKPAAIVFGMGYVTNSAILPVLIGKGGLIISDSLNHNSIVNGARGSGATVRVFQHNTPSHLENVLREQIADGQPRTHRPWKKIIVVVEGIYSMEGELCKLPE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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