Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003307`

染色体: Chr04 坐标: 49803582-49808144 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003307`
名称	SmilChr04G003307
描述	sialyltransferase-like protein 2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	49803582 - 49808144 / `-`

ID 对照

NCBI Gene ID	`LOC131020205`
GeneID	`131020205`
locus_tag	`-`
NCBI Name	`LOC131020205`
原始查询	`LOC131020205`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sialyltransferase-like protein 2
产物	sialyltransferase-like protein 2
Arabidopsis	`AT3G48820` (AT3G48820) Glycosyltransferase family 29 (sialyltransferase) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824043] identity=78.2; qcov=0.994; evalue=0; confidence=high
Rice	`Os02g0118400` (STLP4) - identity=74.1; qcov=0.997; evalue=0; confidence=high
GO	GO:0006486 (GO:0006486); GO:0008373 (sialyltransferase activity)
KEGG	-
Pfam	PF00777 (Glyco_transf_29)
InterPro	-
eggNOG	-
NR	GeneID:131020205

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057804884.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057804884.1`
3	Secreted	分泌到胞外	0.20000	`XP_057804885.1`
4	Nucleus	细胞核	0.00000	`XP_057804884.1`
5	Chromosome	染色体	0.00000	`XP_057804884.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:49804033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr4:49804118`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:49804752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,C15,C51,C77
`Chr4:49805131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B125,B90,B92,C87
`Chr4:49805406`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B109,B53
`Chr4:49805431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:49806740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr4:49806741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr4:49807732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,B57,B88

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804884.1

440 aa

220

440

Glyco_transf_29

PF00777 Glyco_transf_29 157-250 aa

XP_057804885.1

356 aa

178

356

Glyco_transf_29

PF00777 Glyco_transf_29 73-165 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804884.1`	Pfam	`PF00777`	Glyco_transf_29	Family	157	250	5e-27	95.7	Glycosyltransferase family 29 (sialyltransferase)
`XP_057804885.1`	Pfam	`PF00777`	Glyco_transf_29	Family	73	165	2.4e-27	96.7	Glycosyltransferase family 29 (sialyltransferase)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948901.1
CTAACAGAACATAACACATACAGAACGGAACGGCTCTCTCTTCTCTTTCGCTTCTCTACTCTCTCTCTCTCGAGTCTCGACTCTCTTCTCTCAATTCTCTCACTCTCTCGAGTCTCGACTCTCTTCTCTCAATTCTCTCACTGTGCGGCTCTCAAACTCAATATCACAAATAAAAAGAATATCGTCTATAACAAATAAAGAAGGGCCCCTTTTCTTCTTTTCGCCTAGGGCCCCTGAAATGTTATATATAGATTTTATTT...

XM_057948902.1
ATTTCGGCAAGTGTGTGAGTGAAAATGGATTAGGTTTACAAGCTGTAAGGGGTAGGGATGATTGTGAGGTTTCAATGCAGTTCCCCAGGGACACTGTCCCGAAATGGATCCCAAATCGGGAGAACTTGAAGGCTTGACTTTTGATTTCAATCTCTGTGAAGCAGTAGCTACATGGGAGCAGGTGCGAAATAGTACTGCTGTTCTGACTCGAGAATACATTGATGCTTTGCCAAATGGATGGAGAGAATATGCTTGGCGGA...

CDS

2 records

下载 CDS FASTA

LOC131020205
ATGAGGCTGTTGCAGCTGGCCTTTTTGGTTGCTTTAGCCTCTGGGATTGGAGCTCTTCTGGTTTACATAACTGGTGTTTCCAATTTTGATGGGCCGCCTCGTCTTTCCAGTGATGATCTGGAGGCATTGAGATCTTTACAGAGTCATTTCGGCAAGTGTGTGAGTGAAAATGGATTAGGTTTACAAGCTGTAAGGGGTAGGGATGATTGTGAGGTTTCAATGCAGTTCCCCAGGGACACTGTCCCGAAATGGAAAGATCC...

LOC131020205
ATGGATCCCAAATCGGGAGAACTTGAAGGCTTGACTTTTGATTTCAATCTCTGTGAAGCAGTAGCTACATGGGAGCAGGTGCGAAATAGTACTGCTGTTCTGACTCGAGAATACATTGATGCTTTGCCAAATGGATGGAGAGAATATGCTTGGCGGAGGATCAACAAGGGAGCGCTACTGAACCAATGTGAGAATAAAACTCTGTGCATGGAGAAACTCTCACTGGTGCTTCCGGACAATCCTCCTTATACACCAAGGCA...

Protein

2 records

下载 Protein FASTA

XP_057804884.1
MRLLQLAFLVALASGIGALLVYITGVSNFDGPPRLSSDDLEALRSLQSHFGKCVSENGLGLQAVRGRDDCEVSMQFPRDTVPKWKDPKSGELEGLTFDFNLCEAVATWEQVRNSTAVLTREYIDALPNGWREYAWRRINKGALLNQCENKTLCMEKLSLVLPDNPPYTPRQFSRCAVIGNSGDLLRTKFGEEIDSYDAVFRENGAPIENFTEYVGTRSTFRLLNRGSAKALDKVAELYDKGKEVLIVKTTIHDIMNKMIR...

XP_057804885.1
MDPKSGELEGLTFDFNLCEAVATWEQVRNSTAVLTREYIDALPNGWREYAWRRINKGALLNQCENKTLCMEKLSLVLPDNPPYTPRQFSRCAVIGNSGDLLRTKFGEEIDSYDAVFRENGAPIENFTEYVGTRSTFRLLNRGSAKALDKVAELYDKGKEVLIVKTTIHDIMNKMIREVPILNPVYLMLGASFGSAAKGTGLKALEFALSICDTVDMYGFTVDPGYKEWTRYFSESRQGHTPLQGRAYYQMMECLGLIKIH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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