Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003353`

染色体: Chr04 坐标: 50130386-50134498 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003353`
名称	SmilChr04G003353
描述	uncharacterized SmilChr04G003353
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50130386 - 50134498 / `-`

ID 对照

NCBI Gene ID	`LOC131020249`
GeneID	`131020249`
locus_tag	`-`
NCBI Name	`LOC131020249`
原始查询	`LOC131020249`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843709]; symbol=AT1G73740; hit=AT1G73740; species=arabidopsis; confidence=high
产物	UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843709]; symbol=AT1G73740; hit=AT1G73740; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73740` (AT1G73740) UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843709] identity=52.8; qcov=0.918; evalue=5.09e-126; confidence=high
Rice	`Os01g0516700` - identity=42.4; qcov=0.757; evalue=5.94e-66; confidence=medium
GO	GO:0005975 (carbohydrate metabolic process); GO:0030259 (GO:0030259); GO:0050511 (undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity)
KEGG	smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00201 (UDPGT); PF03033 (Glyco_transf_28); PF04101 (Glyco_tran_28_C)
InterPro	-
eggNOG	-
NR	GeneID:131020249

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057804938.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057804938.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057804938.1`
4	Nucleus	细胞核	0.00000	`XP_057804938.1`
5	Chromosome	染色体	0.00000	`XP_057804938.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50132166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:50132230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,C53
`Chr4:50132243`	`G`	`A`	EMS_canonical_SNV	stop_gained	112	A10,A11,A14,A19,A20,A22,A23,A25,A4,A5,A7,A8,A9,B102,B103,B104,B105,B106,B108,B11,B111,B115,B118,B119,B12,B121,B122,B125,B128,B132,B134,B137,B17,B18,B21,B25,B26,B27,B28,B29,B30,B31,B34,B35,B36,B38,B39,B4,B45,B48,B49,B51,B55,B57,B60,B65,B66,B71,B73,B8,B83,B84,B88,B92,B94,B97,B98,C11,C12,C14,C15,C16,C19,C2,C23,C24,C26,C28,C35,C38,C42,C47,C48,C49,C5,C50,C53,C54,C57,C58,C59,C60,C61,C63,C67,C70,C71,C72,C77,C78,C8,C81,C84,C85,C86,C87,C9,D1,D2,D3,D6,D8
`Chr4:50132280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,C53
`Chr4:50132666`	`GC`	`G`	1bp_deletion	frameshift_variant	2	B91,C86
`Chr4:50132666`	`GC`	`G`	1bp_deletion	CDS_variant	2	B91,C86
`Chr4:50133143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr4:50133199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B46,C78
`Chr4:50133493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr4:50133526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr4:50133531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr4:50133606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804938.1

415 aa

208

415

Glyco_transf_28

Glyco_tran_28_C

UDPGT

PF03033 Glyco_transf_28 44-181 aa PF04101 Glyco_tran_28_C 235-399 aa PF00201 UDPGT 309-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804938.1`	Pfam	`PF03033`	Glyco_transf_28	Family	44	181	1.1e-29	103.9	Glycosyltransferase family 28 N-terminal domain
`XP_057804938.1`	Pfam	`PF04101`	Glyco_tran_28_C	Domain	235	399	1e-32	114.1	Glycosyltransferase family 28 C-terminal domain
`XP_057804938.1`	Pfam	`PF00201`	UDPGT	Family	309	380	0.00029	20.5	UDP-glucoronosyl and UDP-glucosyl transferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948955.1
TAAATTTGGAAACTCGAAATTCAAATTTGGGAAGGCTACCGTCGGTTCACGGTTCAGACGGTTCGGCCGTTAAGAACCGCCGGTTCCGGGCAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGTGATTGTGCATCGGCGAAGCTACAACAATGGCTGCCTTGGTCTATTCATCTCTCAACCCCTGCACCATTCCTCTCCATCTCCACTCCCACCTCTCCTTCTCCGCCCAACTACGAGCCGTCTCCACCACCGCCGCCGC...

CDS

1 records

下载 CDS FASTA

LOC131020249
ATGGCTGCCTTGGTCTATTCATCTCTCAACCCCTGCACCATTCCTCTCCATCTCCACTCCCACCTCTCCTTCTCCGCCCAACTACGAGCCGTCTCCACCACCGCCGCCGCTCCCATCCACAACCTCCGAGTACTTATCGCCGCCGGTGGCACAGGCGGTCACATTTACCCCGCCATCGCCATAGCAGACCACCTCAAAACCTTTCACCCCAACGCCAACTTCCTCTTCGTGGGAACCCCCACCGGAATGGAGGCCAAAGC...

Protein

1 records

下载 Protein FASTA

XP_057804938.1
MAALVYSSLNPCTIPLHLHSHLSFSAQLRAVSTTAAAPIHNLRVLIAAGGTGGHIYPAIAIADHLKTFHPNANFLFVGTPTGMEAKAVPSAGFPFTTAPAAPXLSLHNLFVLPFILANSLFKNLKILXEFDPHIVIGTGGFVSFPTCLAAAFKGVKLIIQEQNSVPGIANLVLSLFADKICVAFDSSVECFWAWAAWQRDKCVVCGNPVRLSLVNGASKAAARRHFFPAVEVEKVVVVLGGSLGANAINIALFNVYLQML...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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