当前解析结果
SmilChr04G003357| 统一新 Gene ID | SmilChr04G003357 |
|---|---|
| 名称 | SmilChr04G003357 |
| 描述 | kinesin-like protein NACK1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50167766 - 50173752 / - |
| NCBI Gene ID | LOC131020253 |
|---|---|
| GeneID | 131020253 |
| locus_tag | - |
| NCBI Name | LOC131020253 |
| 原始查询 | LOC131020253 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein NACK1 |
| 产物 | kinesin-like protein NACK1 |
| Arabidopsis | AT1G18370 (HIK)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838418] identity=73.7; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0513900 (OsACK1)- identity=65.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF11995 (DUF3490); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020253 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Centrosome | 中心体 | 1.00000 | XP_057804943.1 |
| 2 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057804943.1 |
| 3 | Spindle | Spindle | 1.00000 | XP_057804943.1 |
| 4 | Spindle pole | Spindle pole | 1.00000 | XP_057804943.1 |
| 5 | Midbody | Midbody | 1.00000 | XP_057804943.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50168440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr4:50168603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:50169312 |
CT |
C |
1bp_deletion | frameshift_variant | 105 | A10,A11,A13,A18,A19,A22,A23,A3,A5,A7,A8,B10,B101,B102,B103,B106,B107,B11,B112,B113,B114,B12,B120,B122,B124,B129,B13,B131,B135,B138,B139,B18,B21,B22,B25,B26,B29,B31,B34,B37,B38,B39,B41,B44,B45,B46,B47,B48,B51,B53,B54,B59,B6,B60,B65,B66,B68,B7,B70,B72,B75,B76,B8,B82,B84,B85,B86,B90,B92,B93,B94,C10,C14,C15,C16,C20,C26,C31,C34,C35,C38,C43,C47,C48,C50,C58,C59,C6,C60,C63,C67,C71,C73,C74,C76,C79,C80,C81,C87,C9,D10,D11,D4,D7,D9 |
Chr4:50169607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr4:50169626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,B3,B61 |
Chr4:50170118 |
GTC |
G |
2bp_deletion | frameshift_variant | 1 | B28 |
Chr4:50170118 |
GTC |
G |
2bp_deletion | CDS_variant | 1 | B28 |
Chr4:50170828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B137,B28,B30,B34,C49 |
Chr4:50171149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B137,B28,B30,B34,C49 |
Chr4:50171854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B137,B28,B30,B34,C49 |
Chr4:50172302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B137,B28,B30,B34,C49 |
Chr4:50172358 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804943.1PF16796
Microtub_bd 36-170 aa
PF00225
Kinesin 39-355 aa
PF11995
DUF3490 783-945 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804943.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 36 | 170 | 3.4e-21 | 76.5 | Microtubule binding |
XP_057804943.1 |
Pfam | PF00225 |
Kinesin | Domain | 39 | 355 | 1e-100 | 337.7 | Kinesin motor domain |
XP_057804943.1 |
Pfam | PF11995 |
DUF3490 | Family | 783 | 945 | 1.6e-66 | 223.7 | Domain of unknown function (DUF3490) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。