Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003357

染色体: Chr04 坐标: 50167766-50173752 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003357
名称SmilChr04G003357
描述kinesin-like protein NACK1
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向50167766 - 50173752 / -

ID 对照

NCBI Gene IDLOC131020253
GeneID131020253
locus_tag-
NCBI NameLOC131020253
原始查询LOC131020253

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein NACK1
产物kinesin-like protein NACK1
ArabidopsisAT1G18370 (HIK)
ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838418]
identity=73.7; qcov=1; evalue=0; confidence=high
RiceOs01g0513900 (OsACK1)
-
identity=65.2; qcov=1; evalue=0; confidence=high
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGGsmil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
PfamPF00225 (Kinesin); PF11995 (DUF3490); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:131020253

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Centrosome 中心体 1.00000 XP_057804943.1
2 Cytoskeleton 细胞骨架 1.00000 XP_057804943.1
3 Spindle Spindle 1.00000 XP_057804943.1
4 Spindle pole Spindle pole 1.00000 XP_057804943.1
5 Midbody Midbody 1.00000 XP_057804943.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:50168440 G A EMS_canonical_SNV CDS_variant 1 B28
Chr4:50168603 G A EMS_canonical_SNV CDS_variant 1 D11
Chr4:50169312 CT C 1bp_deletion frameshift_variant 105 A10,A11,A13,A18,A19,A22,A23,A3,A5,A7,A8,B10,B101,B102,B103,B106,B107,B11,B112,B113,B114,B12,B120,B122,B124,B129,B13,B131,B135,B138,B139,B18,B21,B22,B25,B26,B29,B31,B34,B37,B38,B39,B41,B44,B45,B46,B47,B48,B51,B53,B54,B59,B6,B60,B65,B66,B68,B7,B70,B72,B75,B76,B8,B82,B84,B85,B86,B90,B92,B93,B94,C10,C14,C15,C16,C20,C26,C31,C34,C35,C38,C43,C47,C48,C50,C58,C59,C6,C60,C63,C67,C71,C73,C74,C76,C79,C80,C81,C87,C9,D10,D11,D4,D7,D9
Chr4:50169607 G A EMS_canonical_SNV CDS_variant 2 B56,B96
Chr4:50169626 C T EMS_canonical_SNV CDS_variant 3 B132,B3,B61
Chr4:50170118 GTC G 2bp_deletion frameshift_variant 1 B28
Chr4:50170118 GTC G 2bp_deletion CDS_variant 1 B28
Chr4:50170828 G A EMS_canonical_SNV CDS_variant 5 B137,B28,B30,B34,C49
Chr4:50171149 G A EMS_canonical_SNV CDS_variant 5 B137,B28,B30,B34,C49
Chr4:50171854 C T EMS_canonical_SNV CDS_variant 5 B137,B28,B30,B34,C49
Chr4:50172302 C T EMS_canonical_SNV CDS_variant 5 B137,B28,B30,B34,C49
Chr4:50172358 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057804943.1
970 aa
N
1
485
970
Microtub_bd
Kinesin
DUF3490
C
PF16796 Microtub_bd 36-170 aa PF00225 Kinesin 39-355 aa PF11995 DUF3490 783-945 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804943.1 Pfam PF16796 Microtub_bd Domain 36 170 3.4e-21 76.5 Microtubule binding
XP_057804943.1 Pfam PF00225 Kinesin Domain 39 355 1e-100 337.7 Kinesin motor domain
XP_057804943.1 Pfam PF11995 DUF3490 Family 783 945 1.6e-66 223.7 Domain of unknown function (DUF3490)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057948960.1
GGTACCCGAGAAATAATTTCGGATTGGGTCGAATTTTCGGGTAGGGTACTCGACCCGTACCGAGTATCCAGCCGCTCACTTTATGACAGCGAGACATGAGATTTAAAATAGCCGTTGGCACATTAGAAGTAGCCGTTGCACGTTTTGAACTCAAAATCCAATCAACCCTCCTCACATACAATTGACTCCTCTCTCTCCACTTTCCCCCCATCTCTCTCTTTTGCTCCCATATTGCTTTCCATTTTGATTTGTTTATTTCT...

CDS

1 records

下载 CDS FASTA
LOC131020253
ATGACTGTTAGAACACCAGGCACACCAGCCTCAAAAGTGGACAGGACACCAGCAGCTGCCACTCCAGGTGGAAATACAAATAGAGCAAGGGAAGAGAAAATTGTTGTAACTGTAAGACTAAGGCCTCTGAGCAAGAGAGAGCAAGCATCTAAAGATCAGATAGCCTGGGAATGCATTGATGATCATACAATTGTCTATAATCCGAGCCCCCAAGAACGTGCAGTTCTACCTGCATCTTTTTCATTCGATAAAGTGTTCGG...

Protein

1 records

下载 Protein FASTA
XP_057804943.1
MTVRTPGTPASKVDRTPAAATPGGNTNRAREEKIVVTVRLRPLSKREQASKDQIAWECIDDHTIVYNPSPQERAVLPASFSFDKVFGPDCSTENVYEDGVKTVALSALMGINATIFAYGQTSSGKTYTMRGITEKAVNDIYMHIINTPERDFRIKISGLEIYNENVRDLLNSESGRSLKLLDDPEKGTVVEKLVEETAKDGQHLRHLIHVCDAQRQVGETALNDTSSRSHQIIRLTIESTLRESSNCVRSYVASLNFVDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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