当前解析结果
SmilChr01G001774| 统一新 Gene ID | SmilChr01G001774 |
|---|---|
| 名称 | SmilChr01G001774 |
| 描述 | wall-associated receptor kinase 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 32650047 - 32652979 / - |
| NCBI Gene ID | LOC131020262 |
|---|---|
| GeneID | 131020262 |
| locus_tag | - |
| NCBI Name | LOC131020262 |
| 原始查询 | LOC131020262 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase 2-like |
| 产物 | wall-associated receptor kinase 2-like |
| Arabidopsis | AT1G21270 (WAK2)wall-associated kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838723] identity=42.8; qcov=1.02; evalue=0; confidence=medium |
| Rice | Os04g0598900 (OsWAK50)- identity=45.7; qcov=0.936; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020262 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804955.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804955.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804955.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804955.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804955.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:32650503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C40 |
Chr1:32650837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C40 |
Chr1:32650870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C71,D9 |
Chr1:32650946 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:32651006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C40 |
Chr1:32651473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:32651542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:32651964 |
TA |
T |
1bp_deletion | frameshift_variant | 3 | B4,C36,D3 |
Chr1:32651964 |
TA |
T |
1bp_deletion | CDS_variant | 3 | B4,C36,D3 |
Chr1:32651971 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B123 |
Chr1:32651971 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B123 |
Chr1:32652118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804955.1PF13947
GUB_WAK_bind 36-95 aa
PF07645
EGF_CA 296-331 aa
PF00069
Pkinase 419-683 aa
PF07714
PK_Tyr_Ser-Thr 424-687 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804955.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 36 | 95 | 4.7e-09 | 37.2 | Wall-associated receptor kinase galacturonan-binding |
XP_057804955.1 |
Pfam | PF07645 |
EGF_CA | Domain | 296 | 331 | 5.5e-09 | 36.8 | Calcium-binding EGF domain |
XP_057804955.1 |
Pfam | PF00069 |
Pkinase | Domain | 419 | 683 | 1.7e-41 | 143.1 | Protein kinase domain |
XP_057804955.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 424 | 687 | 1.4e-42 | 146.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。