Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003368`

染色体: Chr04 坐标: 50254139-50257108 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003368`
名称	SmilChr04G003368
描述	uncharacterized SmilChr04G003368
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50254139 - 50257108 / `-`

ID 对照

NCBI Gene ID	`LOC131020263`
GeneID	`131020263`
locus_tag	`-`
NCBI Name	`LOC131020263`
原始查询	`LOC131020263`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DnaJ and Myb-like DNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820318]; symbol=AT3G11450; hit=AT3G11450; species=arabidopsis; confidence=high
产物	DnaJ and Myb-like DNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820318]; symbol=AT3G11450; hit=AT3G11450; species=arabidopsis; confidence=high
Arabidopsis	`AT3G11450` (AT3G11450) DnaJ and Myb-like DNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820318] identity=64.3; qcov=0.875; evalue=0; confidence=high
Rice	`Os04g0377932` - identity=53.4; qcov=0.36; evalue=2.5e-80; confidence=low
GO	GO:0005829 (cytosol); GO:0006450 (regulation of translational fidelity); GO:0030544 (Hsp70 protein binding); GO:0043022 (ribosome binding); GO:0051083 ('de novo' cotranslational protein folding)
KEGG	-
Pfam	PF00226 (DnaJ); PF00249 (Myb_DNA-binding); PF21884 (ZUO1-like_ZHD); PF23082 (Myb_DNA-binding_2)
InterPro	-
eggNOG	-
NR	GeneID:131020263

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804953.1`
2	Cytosol	细胞质基质	0.40000	`XP_057804953.1`
3	Cytoplasm	细胞质	0.20000	`XP_057804953.1`
4	Chromosome	染色体	0.00000	`XP_057804953.1`
5	Centromere	着丝粒	0.00000	`XP_057804953.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50254409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr4:50254499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr4:50254886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B114,B22
`Chr4:50254897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,B82
`Chr4:50254955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B81,B91,C21,C6
`Chr4:50255456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B4,B89,C19,C86
`Chr4:50255522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B26,B28,B30,C6
`Chr4:50255614`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B81,B91,C21,C6
`Chr4:50255738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B4,B89,C19,C86
`Chr4:50255873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B2,B27,C37,C78,D11
`Chr4:50255994`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C68
`Chr4:50255994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804953.1

745 aa

372

745

DnaJ

ZUO1-like_ZHD

Myb_DNA-binding_2

Myb_DNA-binding

PF00226 DnaJ 98-177 aa PF21884 ZUO1-like_ZHD 194-297 aa PF23082 Myb_DNA-binding_2 464-533 aa PF00249 Myb_DNA-binding 594-635 aa PF00249 Myb_DNA-binding 688-733 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804953.1`	Pfam	`PF00226`	DnaJ	Domain	98	177	3.7e-16	59.7	DnaJ domain
`XP_057804953.1`	Pfam	`PF21884`	ZUO1-like_ZHD	Domain	194	297	2.7e-41	141.1	Zuotin-like, zuotin homology domain
`XP_057804953.1`	Pfam	`PF23082`	Myb_DNA-binding_2	Domain	464	533	2.6e-36	124.2	Myb-like DNA-binding domain
`XP_057804953.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	594	635	7e-21	74.8	Myb-like DNA-binding domain
`XP_057804953.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	688	733	7e-21	74.8	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948970.1
GGGCCCAATAACTGACGGCGGCGTATATAAGAGCCATTCGCCTCTCGTTCCAAACCTCTCTCCTGTCTGTTTGCTTTGCCTCGTTGCATAGCAATTACAGAAACCCTAGCTCTCCTCCCATCAATACTCCCGGCGGCGGCGGCGGTGGCGGCGGATTACTTCATGCTTGGAGCGCTCGTTGCAGATTCTCGATTACAGCATTAAGGGATATGGCTTCTCGGAAAAGCATGCTTCTGATTACCTACTCTGAGGAAATTGTG...

CDS

1 records

下载 CDS FASTA

LOC131020263
ATGGCTTCTCGGAAAAGCATGCTTCTGATTACCTACTCTGAGGAAATTGTGGATGGTGAACCAATCATAGTTTGCTCCAATAGCCTACCGATCAAGGTGCATAGAGAACCAGCAGGACATGCCTTCCATGATGCTGCTCTTAAGCTGTCAGGCCACTTTGTGGAGGTGGCTGACAAGGATGAAGATGATGGCAAGACAGCTTCGGAAGAGAAAGAGCGTGTTTATGTTCAATCATCAGATTCTTACAGCAGTAAAGGAAA...

Protein

1 records

下载 Protein FASTA

XP_057804953.1
MASRKSMLLITYSEEIVDGEPIIVCSNSLPIKVHREPAGHAFHDAALKLSGHFVEVADKDEDDGKTASEEKERVYVQSSDSYSSKGKKKPGGDSKQQDHYALLGLSHLRYLATEDQIRKSYREAALRHHPDKQAGLLLLEETEDAKQAKKDEIESLFKSIQEAYEVLIDPVRRRIYDSTDEFDDEIPVDCAPQDFFKVFGPAFLRNGRWSVNQAVPTLGDDKTPIKEVDNFYNFWYAFKSWREFPHADEFDLEQAESRDH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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