Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003366`

染色体: Chr04 坐标: 50243518-50249100 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003366`
名称	SmilChr04G003366
描述	uncharacterized SmilChr04G003366
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50243518 - 50249100 / `+`

ID 对照

NCBI Gene ID	`LOC131020264`
GeneID	`131020264`
locus_tag	`-`
NCBI Name	`LOC131020264`
原始查询	`LOC131020264`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	polarity axis stabilization protein [Source:NCBI gene (formerly Entrezgene);Acc:843730]; symbol=AT1G73930; hit=AT1G73930; species=arabidopsis; confidence=high
产物	polarity axis stabilization protein [Source:NCBI gene (formerly Entrezgene);Acc:843730]; symbol=AT1G73930; hit=AT1G73930; species=arabidopsis; confidence=high
Arabidopsis	`AT1G73930` (AT1G73930) polarity axis stabilization protein [Source:NCBI gene (formerly Entrezgene);Acc:843730] identity=69.8; qcov=0.982; evalue=0; confidence=high
Rice	`Os03g0259700` - identity=58.5; qcov=0.998; evalue=0; confidence=high
GO	GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0055037 (recycling endosome)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131020264

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057804954.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057804954.1`
3	Trans-golgi network	Trans-golgi network	1.00000	`XP_057804954.1`
4	Cytosol	细胞质基质	0.80000	`XP_057804954.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057804954.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50244836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr4:50244842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B98,C86,D10
`Chr4:50244870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B48,D10,D5
`Chr4:50244900`	`C`	`T`	EMS_canonical_SNV	stop_gained	88	A10,A13,A16,A18,A19,A21,A3,A4,A7,B1,B10,B100,B11,B110,B113,B114,B118,B120,B122,B125,B126,B127,B13,B131,B133,B135,B136,B137,B21,B27,B28,B29,B32,B33,B38,B40,B42,B43,B47,B48,B49,B50,B51,B63,B69,B73,B76,B78,B83,B84,B85,B87,B91,B94,B95,B98,B99,C1,C10,C12,C14,C18,C22,C28,C33,C39,C4,C42,C44,C46,C47,C48,C51,C56,C57,C58,C6,C67,C69,C70,C74,C80,C84,D1,D10,D5,D7,D9
`Chr4:50244936`	`C`	`CTA`	2bp_insertion	frameshift_variant	16	A13,A21,A3,A4,B1,B114,B27,B63,B91,C10,C39,C51,C56,C57,C58,D5
`Chr4:50245025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr4:50245298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:50245441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C24,C78,C85
`Chr4:50245872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B48,B60
`Chr4:50245908`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:50246105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D11,D7

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009100645.1
AATATTGCATTGGGGTATAAGTTACCAAACACAATATTTCCACTACATTTTTACAAAATTATTATTGATACTATAACAAGGTTATTTTACTGTAACGTCTAATAATTTATGAAGAAAGTAAAATAAAATATAGTAATACGTACTTTTGCATAAATTTATGTATTCCCTCTCTCCAAAAAGGGGATGTCTGAAAAATTACCGAGAAGCAAAGCGGCAAGATTGAAGGCCAAAATCCAAACAACGCAGCGATCCGAGTTGCT...

XR_009100644.1
ATATTGCATTGGGGTATAAGTTACCAAACACAATATTTCCACTACATTTTTACAAAATTATTATTGATACTATAACAAGGTTATTTTACTGTAACGTCTAATAATTTATGAAGAAAGTAAAATAAAATATAGTAATACGTACTTTTGCATAAATTTATGTATTCCCTCTCTCCAAAAAGGGGATGTCTGAAAAATTACCGAGAAGCAAAGCGGCAAGATTGAAGGCCAAAATCCAAACAACGCAGCGGTAAATAAGCTCT...

CDS

2 records

下载 CDS FASTA

LOC131020264
ATGAGCCGGTCGCCATCATTTTCTGTGAAGTCGGAGCCTGTATCAGAAATTGATGAAAAATCTTTGCAGCAATGGGTGGCTGCATTTTGCATCATCAGGTTTGATCTTGAGCAGGGTCAACTTATTGAAGAGTGTTATCCTCCTGGCTGTCTTACCCAAGGTGAGGAGCTTGAAGTCTCTTTTAATTCTTTCCCGGATTCAGTTTCACAGCATCATAATCGCTCAAGCATCCATGATTGTATATTCTTTTTCCGCGCAAA...

Protein

2 records

下载 Protein FASTA

XP_057804954.1
MSRSPSFSVKSEPVSEIDEKSLQQWVAAFCIIRFDLEQGQLIEECYPPGCLTQGEELEVSFNSFPDSVSQHHNRSSIHDCIFFFRAKREKNLQASSVASTEIVEVVDNKISSQKPIGKNHISYNSRFLYGFVFNRQRHDERLKRGGEQKSVVILSYSPYTSVFRPLLQIMGPLYFDIGSKALNYIAAYVSKWPTPVPGQQMELPIGNASLKVNLPPSHCLPSNSGLFEDSASSLAPLLPSNLSVPQGLFHDSDLFGTFRG...

XP_057804956.1
MSRSPSFSVKSEPVSEIDEKSLQQWVAAFCIIRFDLEQGQLIEECYPPGCLTQGEELEVSFNSFPDSVSQHHNRSSIHDCIFFFRAKREKNLQASSVASTEIVEVVDNKISSQKPIGKNHISYNSRFLYGFVFNRQRHDERLKRGGEQKSVVILSYSPYTSVFRPLLQIMGPLYFDIGSKALNYIAAYVSKWPTPVPGQQMELPIGNASLKVNLPPSHCLPSNSGLFEDSASSLAPLLPSNLSVPQGLFHDSDLFGTFRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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