当前解析结果
SmilChr04G003373| 统一新 Gene ID | SmilChr04G003373 |
|---|---|
| 名称 | SmilChr04G003373 |
| 描述 | protein ASPARTIC PROTEASE IN GUARD CELL 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50294456 - 50296241 / + |
| NCBI Gene ID | LOC131020271 |
|---|---|
| GeneID | 131020271 |
| locus_tag | - |
| NCBI Name | LOC131020271 |
| 原始查询 | LOC131020271 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ASPARTIC PROTEASE IN GUARD CELL 1-like |
| 产物 | protein ASPARTIC PROTEASE IN GUARD CELL 1-like |
| Arabidopsis | AT1G25510 (AT1G25510)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:839137] identity=52.7; qcov=0.998; evalue=4.18e-161; confidence=high |
| Rice | Os01g0140100- identity=56; qcov=0.904; evalue=5.07e-148; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020271 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057804968.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057804968.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804968.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804968.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804968.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50295082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B31,C15,C2,C77 |
Chr4:50295104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,A7,B125,B35,C23 |
Chr4:50295109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B28,C27,C78,C85 |
Chr4:50295132 |
TG |
* |
1bp_deletion | CDS_variant | 1 | C78 |
Chr4:50295161 |
TG |
* |
1bp_deletion | CDS_variant | 1 | C78 |
Chr4:50295451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr4:50295644 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B137,B28,B30,C49,C6 |
Chr4:50295887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,C10 |
Chr4:50295901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:50295915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C24,C78,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804968.1PF00026
Asp 133-467 aa
PF14543
TAXi_N 134-293 aa
PF14541
TAXi_C 317-466 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804968.1 |
Pfam | PF00026 |
Asp | Domain | 133 | 467 | 1.3e-17 | 65.0 | Eukaryotic aspartyl protease |
XP_057804968.1 |
Pfam | PF14543 |
TAXi_N | Domain | 134 | 293 | 2.1e-48 | 165.5 | Xylanase inhibitor N-terminal |
XP_057804968.1 |
Pfam | PF14541 |
TAXi_C | Domain | 317 | 466 | 1.9e-34 | 119.5 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。