当前解析结果
SmilChr04G003384| 统一新 Gene ID | SmilChr04G003384 |
|---|---|
| 名称 | SmilChr04G003384 |
| 描述 | carbon catabolite repressor protein 4 homolog 5 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50380709 - 50385868 / - |
| NCBI Gene ID | LOC131020281 |
|---|---|
| GeneID | 131020281 |
| locus_tag | - |
| NCBI Name | LOC131020281 |
| 原始查询 | LOC131020281 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | carbon catabolite repressor protein 4 homolog 5 |
| 产物 | carbon catabolite repressor protein 4 homolog 5 |
| Arabidopsis | AT1G73875 (AT1G73875)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843724] identity=54.5; qcov=0.779; evalue=3.54e-147; confidence=high |
| Rice | Os06g0264900- identity=45; qcov=0.485; evalue=1.8e-65; confidence=medium |
| GO | GO:0000175 (3'-5'-RNA exonuclease activity) |
| KEGG | - |
| Pfam | PF03372 (Exo_endo_phos) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020281 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.40000 | XP_057804978.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057804979.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057804979.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057804978.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804978.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50381118 |
A |
AG |
1bp_insertion | frameshift_variant | 18 | A2,B113,B117,B124,B135,B138,B37,B44,B47,B6,B68,B95,C14,C21,C65,C67,C70,D7 |
Chr4:50381404 |
TC |
T |
1bp_deletion | frameshift_variant | 40 | A8,B100,B103,B110,B123,B133,B139,B19,B20,B24,B33,B35,B4,B54,B57,B68,B8,B80,B81,B9,C14,C15,C17,C25,C27,C29,C30,C35,C36,C38,C41,C46,C51,C53,C56,C72,C75,C79,C85,D5 |
Chr4:50381599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:50381751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C59 |
Chr4:50381807 |
G |
GC |
1bp_insertion | frameshift_variant | 48 | A10,A18,A2,A20,A24,A7,B102,B105,B11,B111,B112,B118,B123,B131,B132,B133,B135,B138,B14,B15,B22,B25,B28,B31,B36,B40,B44,B47,B55,B60,B72,B88,B89,B90,B92,B95,B98,C42,C59,C62,C64,C66,C67,C75,C83,D1,D3,D4 |
Chr4:50381922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B28,C24,C27,C78,C85 |
Chr4:50383051 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C85 |
Chr4:50383219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,D11 |
Chr4:50383544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr4:50384080 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B114,B20,B22 |
Chr4:50384832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr4:50385635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,B60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804978.1PF03372
Exo_endo_phos 137-437 aa
XP_057804979.1PF03372
Exo_endo_phos 137-437 aa
XP_057804980.1PF03372
Exo_endo_phos 137-460 aa
XP_057804981.1PF03372
Exo_endo_phos 137-460 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804978.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 137 | 437 | 1e-16 | 62.1 | Endonuclease/Exonuclease/phosphatase family |
XP_057804979.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 137 | 437 | 5e-14 | 53.3 | Endonuclease/Exonuclease/phosphatase family |
XP_057804980.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 137 | 460 | 8.2e-19 | 68.9 | Endonuclease/Exonuclease/phosphatase family |
XP_057804981.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 137 | 460 | 4e-16 | 60.2 | Endonuclease/Exonuclease/phosphatase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。