Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003405`

染色体: Chr04 坐标: 50611109-50622117 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003405`
名称	SmilChr04G003405
描述	uncharacterized SmilChr04G003405
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50611109 - 50622117 / `+`

ID 对照

NCBI Gene ID	`LOC131020283`
GeneID	`131020283`
locus_tag	`-`
NCBI Name	`LOC131020283`
原始查询	`LOC131020283`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UBQ, helicase-c and DEAD-like helicase domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830705]; symbol=AT5G08110; hit=AT5G08110; species=arabidopsis; confidence=high
产物	UBQ, helicase-c and DEAD-like helicase domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830705]; symbol=AT5G08110; hit=AT5G08110; species=arabidopsis; confidence=high
Arabidopsis	`AT5G08110` (AT5G08110) UBQ, helicase-c and DEAD-like helicase domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830705] identity=47.6; qcov=1.04; evalue=0; confidence=high
Rice	`Os02g0111900` - identity=50.8; qcov=0.68; evalue=0; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0005515 (protein binding); GO:0005524 (ATP binding)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF09369 (MZB); PF22982 (WHD_HRQ1)
InterPro	-
eggNOG	-
NR	GeneID:131020283

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057804982.1`
2	Chloroplast	叶绿体	0.60000	`XP_057804984.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057804982.1`
4	Chromosome	染色体	0.00000	`XP_057804984.1`
5	Centromere	着丝粒	0.00000	`XP_057804984.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50611311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B99,C8,D11
`Chr4:50612079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B9,C15,C51,C77
`Chr4:50612248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B135,B48,B60,C85
`Chr4:50612326`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,D7
`Chr4:50612444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B9,C15,C51,C77
`Chr4:50612490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:50614089`	`AT`	`A`	1bp_deletion	frameshift_variant	97	A10,A11,A19,A2,A20,A3,A4,A8,B103,B105,B108,B11,B111,B113,B115,B117,B124,B129,B131,B135,B138,B139,B140,B26,B33,B37,B38,B39,B4,B40,B47,B49,B50,B52,B53,B54,B56,B6,B65,B66,B68,B7,B72,B73,B74,B8,B80,B83,B85,B90,B92,B93,B94,B95,B96,B97,B99,C1,C14,C16,C19,C21,C24,C29,C3,C31,C38,C39,C41,C42,C43,C44,C48,C52,C54,C57,C59,C60,C61,C63,C65,C67,C73,C75,C77,C78,C79,C8,C81,C82,C85,C9,D1,D11,D3,D4,D7
`Chr4:50614581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B46,B78,D7
`Chr4:50615150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B85
`Chr4:50616118`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr4:50616577`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C71,D4
`Chr4:50616789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804982.1

1250 aa

625

1250

ResIII

DEAD

Helicase_C

WHD_HRQ1

MZB

PF04851 ResIII 494-647 aa PF00270 DEAD 496-667 aa PF00271 Helicase_C 744-851 aa PF22982 WHD_HRQ1 886-964 aa PF09369 MZB 1128-1209 aa

XP_057804983.1

1241 aa

620

1241

ResIII

DEAD

Helicase_C

WHD_HRQ1

MZB

PF04851 ResIII 485-638 aa PF00270 DEAD 487-658 aa PF00271 Helicase_C 735-842 aa PF22982 WHD_HRQ1 877-955 aa PF09369 MZB 1119-1200 aa

XP_057804984.1

1239 aa

620

1239

ResIII

DEAD

Helicase_C

WHD_HRQ1

MZB

PF04851 ResIII 483-636 aa PF00270 DEAD 485-656 aa PF00271 Helicase_C 733-840 aa PF22982 WHD_HRQ1 875-953 aa PF09369 MZB 1117-1198 aa

XP_057804985.1

1230 aa

615

1230

ResIII

DEAD

Helicase_C

WHD_HRQ1

MZB

PF04851 ResIII 474-627 aa PF00270 DEAD 476-647 aa PF00271 Helicase_C 724-831 aa PF22982 WHD_HRQ1 866-944 aa PF09369 MZB 1108-1189 aa

XP_057804986.1

1190 aa

595

1190

ResIII

DEAD

Helicase_C

MZB

PF04851 ResIII 494-647 aa PF00270 DEAD 496-667 aa PF00271 Helicase_C 744-851 aa PF09369 MZB 1068-1149 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804982.1`	Pfam	`PF04851`	ResIII	Family	494	647	9e-06	26.4	Type III restriction enzyme, res subunit
`XP_057804982.1`	Pfam	`PF00270`	DEAD	Domain	496	667	2.5e-29	102.9	DEAD/DEAH box helicase
`XP_057804982.1`	Pfam	`PF00271`	Helicase_C	Domain	744	851	2.2e-14	54.4	Helicase conserved C-terminal domain
`XP_057804982.1`	Pfam	`PF22982`	WHD_HRQ1	Domain	886	964	1.4e-15	58.7	ATP-dependent helicase HRQ1, winged helix domain
`XP_057804982.1`	Pfam	`PF09369`	MZB	Domain	1128	1209	8.4e-20	72.0	MrfA Zn-binding domain
`XP_057804983.1`	Pfam	`PF04851`	ResIII	Family	485	638	8.9e-06	26.4	Type III restriction enzyme, res subunit
`XP_057804983.1`	Pfam	`PF00270`	DEAD	Domain	487	658	2.4e-29	102.9	DEAD/DEAH box helicase
`XP_057804983.1`	Pfam	`PF00271`	Helicase_C	Domain	735	842	2.1e-14	54.4	Helicase conserved C-terminal domain
`XP_057804983.1`	Pfam	`PF22982`	WHD_HRQ1	Domain	877	955	1.4e-15	58.8	ATP-dependent helicase HRQ1, winged helix domain
`XP_057804983.1`	Pfam	`PF09369`	MZB	Domain	1119	1200	8.4e-20	72.0	MrfA Zn-binding domain
`XP_057804984.1`	Pfam	`PF04851`	ResIII	Family	483	636	8.8e-06	26.4	Type III restriction enzyme, res subunit
`XP_057804984.1`	Pfam	`PF00270`	DEAD	Domain	485	656	2.7e-29	102.8	DEAD/DEAH box helicase
`XP_057804984.1`	Pfam	`PF00271`	Helicase_C	Domain	733	840	2.1e-14	54.4	Helicase conserved C-terminal domain
`XP_057804984.1`	Pfam	`PF22982`	WHD_HRQ1	Domain	875	953	1.4e-15	58.8	ATP-dependent helicase HRQ1, winged helix domain
`XP_057804984.1`	Pfam	`PF09369`	MZB	Domain	1117	1198	8.4e-20	72.0	MrfA Zn-binding domain
`XP_057804985.1`	Pfam	`PF04851`	ResIII	Family	474	627	8.7e-06	26.5	Type III restriction enzyme, res subunit
`XP_057804985.1`	Pfam	`PF00270`	DEAD	Domain	476	647	2.6e-29	102.8	DEAD/DEAH box helicase
`XP_057804985.1`	Pfam	`PF00271`	Helicase_C	Domain	724	831	2e-14	54.5	Helicase conserved C-terminal domain
`XP_057804985.1`	Pfam	`PF22982`	WHD_HRQ1	Domain	866	944	1.4e-15	58.8	ATP-dependent helicase HRQ1, winged helix domain
`XP_057804985.1`	Pfam	`PF09369`	MZB	Domain	1108	1189	8.3e-20	72.0	MrfA Zn-binding domain
`XP_057804986.1`	Pfam	`PF04851`	ResIII	Family	494	647	8.2e-06	26.5	Type III restriction enzyme, res subunit
`XP_057804986.1`	Pfam	`PF00270`	DEAD	Domain	496	667	2.3e-29	103.0	DEAD/DEAH box helicase
`XP_057804986.1`	Pfam	`PF00271`	Helicase_C	Domain	744	851	1.8e-14	54.6	Helicase conserved C-terminal domain
`XP_057804986.1`	Pfam	`PF09369`	MZB	Domain	1068	1149	7.9e-20	72.0	MrfA Zn-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057949003.1
AAAAAAAGGGAAATCCGAGTGACAACTAACTCCTCCCCATCCCCGCCAAATAGGTTTTCGACAGTAGTGCAAAATTTCCATCAAAACCAAACACCGTGAAAACGAAGACAAATTGAAAATTTAACGGAAATTTGCTGAGAAAATGGACGATCGGAGTGGATATGAGCGGGAAATCGAGGTCCGCAGCTTGATGGGTGACTCTGTCCGAGTCTCCATTGAACCAAGCAACACCATTCAAGACCTCAAGCTCCGTCTCAGGC...

XM_057948999.1
AAAAAAGGGAAATCCGAGTGACAACTAACTCCTCCCCATCCCCGCCAAATAGGTTTTCGACAGTAGTGCAAAATTTCCATCAAAACCAAACACCGTGAAAACGAAGACAAATTGAAAATTTAACGGAAATTTGCTGAGAAAATGGACGATCGGAGTGGATATGAGCGGGAAATCGAGGTCCGCAGCTTGATGGGTGACTCTGTCCGAGTCTCCATTGAACCAAGCAACACCATTCAAGACCTCAAGCTCCGTCTCAGGCA...

CDS

5 records

下载 CDS FASTA

LOC131020283
ATGGACGATCGGAGTGGATATGAGCGGGAAATCGAGGTCCGCAGCTTGATGGGTGACTCTGTCCGAGTCTCCATTGAACCAAGCAACACCATTCAAGACCTCAAGCTCCGTCTCAGGCAATGTTTCTCCCCGGCTGCTTCTGCCCCAGATTTCCACCTTTTCCTCAAGGGTGTGAAATTGGACTTGCTGAGTGAGATCAGTAACTATTCGATTGGGGTTACAGAATTTCTAGTTGCTGTGCCGTTTATAAAAAAGGACAG...

Protein

5 records

下载 Protein FASTA

XP_057804982.1
MDDRSGYEREIEVRSLMGDSVRVSIEPSNTIQDLKLRLRQCFSPAASAPDFHLFLKGVKLDLLSEISNYSIGVTEFLVAVPFIKKDRQHRQRVEASETVAKDSNSNDRLPNDSAESVWSDLMQDLSCFQDLPNHENLAEAKVKSRNSENENASEMRTSLTMKRREKVFNKGKEKPSCDALLNILPTSGDGMLDEQSLKKFLQFLDSSSCLSDPGSGSCVMREADAVVGCKLDSCKSSSCLCPLWLKDMIKTFILVNVYSA...

XP_057804983.1
MDDRSGYEREIEVRSLMGDSVRVSIEPSNTIQDLKLRLRQCFSPAASAPDFHLFLKGVKLDLLSEISNYSIGVTEFLVAVPFIKKDRQHRQRVEASETVAKDSNSNDRLPNDSAESVWSDLMQDLSCFQDLPNHENLAEAKVKSRNSENENASEMRTSLTMKRREKVFNKGKEKPSCDALLNILPTSGDGMLDEQSLKKFLQFLDSSSCLSDPGSGSCVMREADAVVGCKLDSCKSSSCLCPLWLKDMIKTFILVNVYSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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