当前解析结果
SmilChr04G003412| 统一新 Gene ID | SmilChr04G003412 |
|---|---|
| 名称 | SmilChr04G003412 |
| 描述 | ABC transporter B family member 25 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50740120 - 50745404 / + |
| NCBI Gene ID | LOC131020286 |
|---|---|
| GeneID | 131020286 |
| locus_tag | - |
| NCBI Name | LOC131020286 |
| 原始查询 | LOC131020286 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 25 |
| 产物 | ABC transporter B family member 25 |
| Arabidopsis | AT5G39040 (ABCB27)transporter associated with antigen processing protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:833896] identity=77.1; qcov=0.987; evalue=0; confidence=high |
| Rice | Os03g0755100 (ABCB25)- identity=79.3; qcov=0.979; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0015421 (ABC-type oligopeptide transporter activity); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020286 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057804990.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057804990.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804990.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804990.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804990.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50740426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr4:50741206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:50742500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr4:50742578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B76,B95,C45,C7 |
Chr4:50742901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:50744674 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A6,B76,C10,C16,D5 |
Chr4:50745127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B76,C10,C16,D5 |
Chr4:50745233 |
G |
GT |
1bp_insertion | stop_gained,frameshift_variant | 5 | B135,B54,C50,C70,C85 |
Chr4:50745233 |
G |
GT |
1bp_insertion | CDS_variant | 5 | B135,B54,C50,C70,C85 |
Chr4:50745263 |
C |
CA |
1bp_insertion | frameshift_variant | 22 | A20,A8,B101,B111,B128,B46,B49,B54,B60,B70,B74,B9,C15,C31,C44,C54,C56,C61,C62,C75,C82,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804990.1PF00664
ABC_membrane 61-337 aa
PF00005
ABC_tran 404-554 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804990.1 |
Pfam | PF00664 |
ABC_membrane | Family | 61 | 337 | 6.5e-63 | 213.7 | ABC transporter transmembrane region |
XP_057804990.1 |
Pfam | PF00005 |
ABC_tran | Domain | 404 | 554 | 1.4e-33 | 117.1 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。