Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003412

染色体: Chr04 坐标: 50740120-50745404 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003412
名称SmilChr04G003412
描述ABC transporter B family member 25
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向50740120 - 50745404 / +

ID 对照

NCBI Gene IDLOC131020286
GeneID131020286
locus_tag-
NCBI NameLOC131020286
原始查询LOC131020286

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ABC transporter B family member 25
产物ABC transporter B family member 25
ArabidopsisAT5G39040 (ABCB27)
transporter associated with antigen processing protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:833896]
identity=77.1; qcov=0.987; evalue=0; confidence=high
RiceOs03g0755100 (ABCB25)
-
identity=79.3; qcov=0.979; evalue=0; confidence=high
GOGO:0005524 (ATP binding); GO:0015421 (ABC-type oligopeptide transporter activity); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport)
KEGG-
PfamPF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro-
eggNOG-
NRGeneID:131020286

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 1.00000 XP_057804990.1
2 Vacuole membrane 液泡膜 1.00000 XP_057804990.1
3 Nucleus 细胞核 0.00000 XP_057804990.1
4 Chromosome 染色体 0.00000 XP_057804990.1
5 Centromere 着丝粒 0.00000 XP_057804990.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:50740426 G A EMS_canonical_SNV CDS_variant 1 B121
Chr4:50741206 G A EMS_canonical_SNV CDS_variant 1 B140
Chr4:50742500 C T EMS_canonical_SNV CDS_variant 1 B34
Chr4:50742578 C T EMS_canonical_SNV CDS_variant 5 B123,B76,B95,C45,C7
Chr4:50742901 G A EMS_canonical_SNV CDS_variant 1 B46
Chr4:50744674 C T EMS_canonical_SNV CDS_variant 5 A6,B76,C10,C16,D5
Chr4:50745127 G A EMS_canonical_SNV CDS_variant 5 A6,B76,C10,C16,D5
Chr4:50745233 G GT 1bp_insertion stop_gained,frameshift_variant 5 B135,B54,C50,C70,C85
Chr4:50745233 G GT 1bp_insertion CDS_variant 5 B135,B54,C50,C70,C85
Chr4:50745263 C CA 1bp_insertion frameshift_variant 22 A20,A8,B101,B111,B128,B46,B49,B54,B60,B70,B74,B9,C15,C31,C44,C54,C56,C61,C62,C75,C82,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057804990.1
632 aa
N
1
316
632
ABC_membrane
ABC_tran
C
PF00664 ABC_membrane 61-337 aa PF00005 ABC_tran 404-554 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804990.1 Pfam PF00664 ABC_membrane Family 61 337 6.5e-63 213.7 ABC transporter transmembrane region
XP_057804990.1 Pfam PF00005 ABC_tran Domain 404 554 1.4e-33 117.1 ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057949007.1
AAGAAAATAAAATATTTAAAAATAAAAATTATACACTTTTATGAGAAGAAGAAAAAATTATTCACTTTTAGTAAAGTATGCACATTTTCATCGAAGCTAACAGCCTAACATTATGTGTTTTCGTATTGTTGAAAACATTTGTAATATCATCTAAAAAAAATAAAGGAATAATTATATGAAGTAGGATATTATTATAGGCGAAGGAGTTAGCAGGAAGCGCGTACTATCTATCGAAAAGGAGAAGAGAGAAGAAGTGGAGT...

CDS

1 records

下载 CDS FASTA
LOC131020286
ATGCACGGTCACGGATATGGTAGTGAAAGAAGTCCTCTTCTTGGCAGACAAGGCGGAGGAAGAAGGAATGGTGCTGAAGAAAATGGTCAGCTGACTGACCTTGAGCACGGAGATGCTGTGCCGGCGGCAAATGTGGGATTTGGTAGAGTGATATCACTTGCAAAACCCGAAGCAGGCAGTTTGGTTATTGCCACAGTTGCTCTGTTGATTGCTTCAACTTCTAGTATATTGGTGCCAAAGTTTGGAGGGAAGATAATTGA...

Protein

1 records

下载 Protein FASTA
XP_057804990.1
MHGHGYGSERSPLLGRQGGGRRNGAEENGQLTDLEHGDAVPAANVGFGRVISLAKPEAGSLVIATVALLIASTSSILVPKFGGKIIDIVSGDIQTPEQKSEALSAVYSTIFAIFLIVVIGSICTTIRAWLFSSASERVVARIRKNLFSHLVSQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPVISVAVRQFGRYVRELSHKTQAAAAVASSIAEETFGAVRTVR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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