Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003394

染色体: Chr04 坐标: 50481149-50491414 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003394
名称SmilChr04G003394
描述uncharacterized mitochondrial protein AtMg00810-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向50481149 - 50491414 / +

ID 对照

NCBI Gene IDLOC131020300
GeneID131020300
locus_tag-
NCBI NameLOC131020300
原始查询LOC131020300

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415]; symbol=CRK8; hit=AT4G23160; species=arabidopsis; confidence=high
产物cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415]; symbol=CRK8; hit=AT4G23160; species=arabidopsis; confidence=high
ArabidopsisAT4G23160 (CRK8)
cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415]
identity=46.3; qcov=0.826; evalue=5.59e-59; confidence=high
RiceOs10g0432200
-
identity=45.9; qcov=0.749; evalue=2.99e-53; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131020300

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057805011.1
2 Nucleus 细胞核 0.60000 XP_057805011.1
3 Chromosome 染色体 0.00000 XP_057805011.1
4 Centromere 着丝粒 0.00000 XP_057805011.1
5 Chromatin 染色质 0.00000 XP_057805011.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:50487066 C T EMS_canonical_SNV CDS_variant 2 B119,B91
Chr4:50487093 CAA C 2bp_deletion frameshift_variant 4 B119,B131,B71,B87
Chr4:50487093 CAA C 2bp_deletion CDS_variant 4 B119,B131,B71,B87
Chr4:50487135 C T EMS_canonical_SNV CDS_variant 4 B119,B66,B94,C23
Chr4:50487138 C T EMS_canonical_SNV CDS_variant 4 B119,B66,B94,C23
Chr4:50487141 C T EMS_canonical_SNV CDS_variant 4 B119,B66,B94,C23
Chr4:50487147 C T EMS_canonical_SNV CDS_variant 4 B119,B66,B94,C23
Chr4:50490680 ACT A 2bp_deletion frameshift_variant 69 A14,A4,A5,A9,B1,B100,B105,B120,B121,B125,B126,B128,B129,B130,B132,B134,B17,B21,B22,B29,B3,B36,B4,B44,B46,B50,B55,B56,B57,B63,B7,B75,B78,B81,B82,B88,B89,B90,B91,B96,C11,C13,C18,C19,C20,C21,C25,C26,C28,C36,C37,C39,C4,C45,C46,C5,C50,C53,C55,C6,C64,C66,C69,C72,C74,C84,C87,D2,D6
Chr4:50490752 G A EMS_canonical_SNV CDS_variant 1 C50
Chr4:50490767 C T EMS_canonical_SNV stop_gained 13 B104,B108,B137,B24,B28,B30,B48,B60,B9,C15,C49,C51,C77
Chr4:50490788 C T EMS_canonical_SNV CDS_variant 5 B108,B9,C15,C51,C77
Chr4:50490801 C T EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XR_009100661.1
ATCTTTTGTGACTTGAACTTTTAGATCTGAAATAACACTTTCTCTCTCGCTCCTCTCTTTCTTTTTCTACAAGATATCGTTTATTCAACATGGTATACAGAGCATAACAGGTTTCCGATCCATGGGCAAAATTCGTCATTTTCCGTGGAATGTATTGGTTGATGAGGAAACTGGAGGTCAGCACGACGAGGAGCTGATTACCAAGAATGGATCGCGTTTCAAAGCCGAAGGAAGTCGGCGAACGGAGAGAATGACTGAGC...
XM_057949028.1
CCAACATTAAGGTAGTGTAGATAATTAGCATTTCACTCTTATATTTTTTAAAAAATTGGTTTTAACGTGTTGCTCAATTACATCAGCCAGCTAATCTTATTCACCATATCTTTCAGCCATGTATCACTTCAGAATCCTATTTCATTTAAATTTCCCCATGCCCATCAGCCTTCTTCATTTTCATCTTTGAAAAATTATGTGAAACTCAAACTTGCTCAGCACATTTATTCGATCATCTTCTTCCATAGAGCTTCAATTGA...

CDS

2 records

下载 CDS FASTA
LOC131020300
ATGGGCTTAAGCAGGCCTCTCGTGAGTGGAACACTGAGTTTTGCAAGCATCTCTTCCAGTTTGGATTTGTTCAATCCTCTTCAGACCACTGCTTATACCTCAAGGAGCTCAAGGCATTTCTTCACTGTGTTTACTATCAAAGATTTGGGGATTGTCAAGTATTTTCTTGGGATGGAGATAGCACGAGGAGAGTCTGGTACATGCCTAAACCAGAGAAAATACATTTTAGATCTTCTTAAGTCCGCTGGGCTGCTTGGGTG...
LOC131020300
ATGGGCTTAAGCAGGCCTCTCGTGAGTGGAACACTGAGTTTTGCAAGCATCTCTTCCAGTTTGGATTTGTTCAATCCTCTTCAGACCACTGCTTATACCTCAAGGAGCTCAAGGCATTTCTTCACTGTGTTTACTATCAAAGATTTGGGGATTGTCAAGTATTTTCTTGGGATGGAGATAGCACGAGGAGAGTCTGGTACATGCCTAAACCAGAGAAAATACATTTTAGATCTTCTTAAGTCCGCTGGGCTGCTTGGGTG...

Protein

2 records

下载 Protein FASTA
XP_057805011.1
MGLSRPLVSGTLSFASISSSLDLFNPLQTTAYTSRSSRHFFTVFTIKDLGIVKYFLGMEIARGESGTCLNQRKYILDLLKSAGLLGCRSVATPLPLNCRLFLNDSSAYSQLDAYRRLVGRLLYLNLTRPDITYAIQQLSQFVATPSELHWDAAIHVLKYLKGCPSLGLFYPTDTPLVLNAYSDADWGTCPDTRRSLTGYCIILGGSLISWHCKKHATVFVSSAEAEYWALSTTVREMIWLSHLYEDFRVTLPLEKRGIN
XP_057805012.1
MGLSRPLVSGTLSFASISSSLDLFNPLQTTAYTSRSSRHFFTVFTIKDLGIVKYFLGMEIARGESGTCLNQRKYILDLLKSAGLLGCRSVATPLPLNCRLFLNDSSAYSQLDAYRRLVGRLLYLNLTRPDITYAIQQLSQFVATPSELHWDAAIHVLKYLKGCPSLGLFYPTDTPLVLNAYSDADWGTCPDTRRSLTGYCIILGGSLISWHCKKHATVFVSSAEAEYWALSTTVREMIWLSHLYEDFRVTLPLEKRGIN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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