当前解析结果
SmilChr04G003394| 统一新 Gene ID | SmilChr04G003394 |
|---|---|
| 名称 | SmilChr04G003394 |
| 描述 | uncharacterized mitochondrial protein AtMg00810-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 50481149 - 50491414 / + |
| NCBI Gene ID | LOC131020300 |
|---|---|
| GeneID | 131020300 |
| locus_tag | - |
| NCBI Name | LOC131020300 |
| 原始查询 | LOC131020300 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415]; symbol=CRK8; hit=AT4G23160; species=arabidopsis; confidence=high |
| 产物 | cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415]; symbol=CRK8; hit=AT4G23160; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=46.3; qcov=0.826; evalue=5.59e-59; confidence=high |
| Rice | Os10g0432200- identity=45.9; qcov=0.749; evalue=2.99e-53; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020300 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057805011.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057805011.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057805011.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057805011.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057805011.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:50487066 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,B91 |
Chr4:50487093 |
CAA |
C |
2bp_deletion | frameshift_variant | 4 | B119,B131,B71,B87 |
Chr4:50487093 |
CAA |
C |
2bp_deletion | CDS_variant | 4 | B119,B131,B71,B87 |
Chr4:50487135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B66,B94,C23 |
Chr4:50487138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B66,B94,C23 |
Chr4:50487141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B66,B94,C23 |
Chr4:50487147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B66,B94,C23 |
Chr4:50490680 |
ACT |
A |
2bp_deletion | frameshift_variant | 69 | A14,A4,A5,A9,B1,B100,B105,B120,B121,B125,B126,B128,B129,B130,B132,B134,B17,B21,B22,B29,B3,B36,B4,B44,B46,B50,B55,B56,B57,B63,B7,B75,B78,B81,B82,B88,B89,B90,B91,B96,C11,C13,C18,C19,C20,C21,C25,C26,C28,C36,C37,C39,C4,C45,C46,C5,C50,C53,C55,C6,C64,C66,C69,C72,C74,C84,C87,D2,D6 |
Chr4:50490752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:50490767 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | B104,B108,B137,B24,B28,B30,B48,B60,B9,C15,C49,C51,C77 |
Chr4:50490788 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B9,C15,C51,C77 |
Chr4:50490801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。