Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003408`

染色体: Chr04 坐标: 50662333-50682806 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003408`
名称	SmilChr04G003408
描述	truncated transcription factor CAULIFLOWER A-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	50662333 - 50682806 / `-`

ID 对照

NCBI Gene ID	`LOC131020304`
GeneID	`131020304`
locus_tag	`-`
NCBI Name	`LOC131020304`
原始查询	`LOC131020304`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	truncated transcription factor CAULIFLOWER A-like
产物	truncated transcription factor CAULIFLOWER A-like
Arabidopsis	`AT5G60910` (AGL8) AGAMOUS-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:836212] identity=53.3; qcov=0.988; evalue=2.2e-76; confidence=high
Rice	`Os07g0605200` (MADS18) - identity=49.6; qcov=1.02; evalue=1.12e-69; confidence=high
GO	GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF00319 (SRF-TF); PF01486 (K-box)
InterPro	-
eggNOG	-
NR	GeneID:131020304

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805016.1`
2	Chromosome	染色体	0.00000	`XP_057805016.1`
3	Centromere	着丝粒	0.00000	`XP_057805016.1`
4	Chromatin	染色质	0.00000	`XP_057805016.1`
5	Telomere	端粒	0.00000	`XP_057805016.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:50662575`	`GC`	`G`	1bp_deletion	frameshift_variant	2	B22,C55
`Chr4:50662575`	`GC`	`G`	1bp_deletion	CDS_variant	2	B22,C55
`Chr4:50662644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B121
`Chr4:50670129`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:50670505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C8
`Chr4:50682301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B9,C15,C51,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805016.1

248 aa

124

248

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 89-172 aa

XP_057805017.1

247 aa

124

247

SRF-TF

K-box

PF00319 SRF-TF 10-57 aa PF01486 K-box 89-171 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805016.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	6.9e-23	80.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057805016.1`	Pfam	`PF01486`	K-box	Family	89	172	2.9e-23	82.5	K-box region
`XP_057805017.1`	Pfam	`PF00319`	SRF-TF	Domain	10	57	6.8e-23	80.6	SRF-type transcription factor (DNA-binding and dimerisation domain)
`XP_057805017.1`	Pfam	`PF01486`	K-box	Family	89	171	1.5e-25	89.9	K-box region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057949033.1
AGAAATGGAAAACGCATCACCATTGGATCCACCTGGTTTTCCAAAACCATACATTCTACATCTGAAACCACTATTTCCTGCTTTTACTCCGCGCACACACACACCATATCACACATACTACACAGGGATAATTTAAGAATCAAATGCGATATTTCATATCTATCTCTCGCCCTTTATATATATATCGCGTTTTTGTGTGTGGGCAAAGAGACTAGGCAGCCGAGGGCAAGCGCGCATATGTACGAAAATGGCAAAAACCA...

XM_057949034.1
AAACGCATCACCATTGGATCCACCTGGTTTTCCAAAACCATACATTCTACATCTGAAACCACTATTTCCTGCTTTTACTCCGCGCACACACACACCATATCACACATACTACACAGGGATAATTTAAGAATCAAATGCGATATTTCATATCTATCTCTCGCCCTTTATATATATATCGCGTTTTTGTGTGTGGGCAAAGAGACTAGGCAGCCGAGGGCAAGCGCGCATATGTACGAAAATGGCAAAAACCAGAGCGGGTA...

CDS

2 records

下载 CDS FASTA

LOC131020304
ATGGGGAGGGGAAAAGTGGAGCTGAAGAGAATAGAGAACAAGGTGAACCAGCAGGTGACTTTTTCGAAGAGGCGATCGGGACTGCTGAAGAAAGCTCACGAGATTTCTGTCCTCTGCGACGCCGATGTCGGATTGATGATCTTCTCCACCAAAGGAAAGCTCTCTGAATATGCTACTGATTCCTGCATGGAAAGAATCCTCCACCGTTATGAAAGATCTTCGTCTGTTGATGGGCATAAGGCACCTGATCTTCAATCTCC...

Protein

2 records

下载 Protein FASTA

XP_057805016.1
MGRGKVELKRIENKVNQQVTFSKRRSGLLKKAHEISVLCDADVGLMIFSTKGKLSEYATDSCMERILHRYERSSSVDGHKAPDLQSPGSWNVELGKLKTRLDVLQKNHSRNLSGENLECLSSKELQNLEHQLDTSLKKLRSRKNHLMNESISTMQKKDKSLQEQNNLLSRKIKEKEKEKELGEETGPAQNQHMCVDVEQHLSSLNTSETYENEGDVGQSEGCNNNEVITTAPPWMLRHIQMQGQNGQT

XP_057805017.1
MGRGKVELKRIENKVNQQVTFSKRRSGLLKKAHEISVLCDADVGLMIFSTKGKLSEYATDSCMERILHRYERSSSVDGHKAPDLQSPGSWNVELGKLKTRLDVLQKNHRNLSGENLECLSSKELQNLEHQLDTSLKKLRSRKNHLMNESISTMQKKDKSLQEQNNLLSRKIKEKEKEKELGEETGPAQNQHMCVDVEQHLSSLNTSETYENEGDVGQSEGCNNNEVITTAPPWMLRHIQMQGQNGQT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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