Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G003430

染色体: Chr04 坐标: 50877702-50879626 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G003430
名称SmilChr04G003430
描述uncharacterized SmilChr04G003430
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向50877702 - 50879626 / -

ID 对照

NCBI Gene IDLOC131020324
GeneID131020324
locus_tag-
NCBI NameLOC131020324
原始查询LOC131020324

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述myb-like protein Q [Source:NCBI gene (formerly Entrezgene);Acc:833915]; symbol=AT5G39200; hit=AT5G39200; species=arabidopsis; confidence=low
产物myb-like protein Q [Source:NCBI gene (formerly Entrezgene);Acc:833915]; symbol=AT5G39200; hit=AT5G39200; species=arabidopsis; confidence=low
ArabidopsisAT5G39200 (AT5G39200)
myb-like protein Q [Source:NCBI gene (formerly Entrezgene);Acc:833915]
identity=28.9; qcov=0.838; evalue=3.3e-10; confidence=low
RiceOs01g0193400 (OsSTA6)
-
identity=33.6; qcov=0.583; evalue=1.14e-06; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131020324

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057805041.1
2 Nucleus 细胞核 0.00000 XP_057805041.1
3 Chromosome 染色体 0.00000 XP_057805041.1
4 Centromere 着丝粒 0.00000 XP_057805041.1
5 Chromatin 染色质 0.00000 XP_057805041.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:50878060 CTG C 2bp_deletion frameshift_variant 15 A20,B122,B126,B18,B38,B39,B58,B62,B69,B80,B95,C13,C30,C76,D8
Chr4:50878311 C T EMS_canonical_SNV CDS_variant 1 B28
Chr4:50878353 G A EMS_canonical_SNV CDS_variant 3 B100,C32,C68
Chr4:50878392 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:50878611 C T EMS_canonical_SNV CDS_variant 1 C48

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057949058.1
GTCTCTTTCGACTCCTATTTTTGTTTCTCAAGAATTTGTACAATATTGGTTTTTCTTCGTCGAACTGCACGTCGGAAAGAGGAATCTGCGCTCAGTTTTTCTGGCCAGTTTTTTAGGGGACTTTGGCCGGAAATAACACAATTAAAAGGCTCTTTCTGATTCTTCATTTCCTTCCTGTGCATATTATGGGATGAGTAAATTGAAGTGGAATGGAATCTAGTGAAGTGAAGAGAAGCACATCTCCAGCAGCATCCAATGAA...
XM_057949059.1
GTCTCTTTCGACTCCTATTTTTGTTTCTCAAGAATTTGTACAATATTGGTTTTTCTTCGTCGAACTGCACGTCGGAAAGAGGAATCTGCGCTCAGTTTTTCTGGCCAGTTTTTTAGGGGACTTTGGCCGGAAATAACACAATTAAAAGGCTCTTTCTGATTCTTCATTTCCTTCCTGTGCATATTATGATTATTAATTAGATAGCGTTGAGAGGAGATGCAGGGATGAGTAAATTGAAGTGGAATGGAATCTAGTGAAGT...

CDS

2 records

下载 CDS FASTA
LOC131020324
ATGGAATCTAGTGAAGTGAAGAGAAGCACATCTCCAGCAGCATCCAATGAAGTCGATGTAGCCGATGACGACTGCAGCTCCAAGAAACCCCCGAAGCCGGAGGCGACGCAGCCGCCCCTGAATCAAGAGATGGAGCGGTGCCCCTCCGGCTACAGGATCCCGGCCTCCGTGTTCGAGTCGTCGACGCAGGGCGACTGGAGCGTCGCCTCCAACGAGTCGCTCTTCAGCATCCACATGGGCAACATGAGCTTCACCAACGA...
LOC131020324
ATGGAATCTAGTGAAGTGAAGAGAAGCACATCTCCAGCAGCATCCAATGAAGTCGATGTAGCCGATGACGACTGCAGCTCCAAGAAACCCCCGAAGCCGGAGGCGACGCAGCCGCCCCTGAATCAAGAGATGGAGCGGTGCCCCTCCGGCTACAGGATCCCGGCCTCCGTGTTCGAGTCGTCGACGCAGGGCGACTGGAGCGTCGCCTCCAACGAGTCGCTCTTCAGCATCCACATGGGCAACATGAGCTTCACCAACGA...

Protein

2 records

下载 Protein FASTA
XP_057805041.1
MESSEVKRSTSPAASNEVDVADDDCSSKKPPKPEATQPPLNQEMERCPSGYRIPASVFESSTQGDWSVASNESLFSIHMGNMSFTNDYYTWRSGELGPPTSDHMFCYSEHSSTGGAADMRSRELGLAEATMLEVIKENEGRSPPRPLPAEVRNARRSAGSNHSNMSFAFSVAGGDTERIPSSTKSTAAAAVAAAAEAEAEAAEAENNAAEAEHDEAKEKEKGAQHRSNWLFCCPCWSFCS
XP_057805042.1
MESSEVKRSTSPAASNEVDVADDDCSSKKPPKPEATQPPLNQEMERCPSGYRIPASVFESSTQGDWSVASNESLFSIHMGNMSFTNDYYTWRSGELGPPTSDHMFCYSEHSSTGGAADMRSRELGLAEATMLEVIKENEGRSPPRPLPAEVRNARRSAGSNHSNMSFAFSVAGGDTERIPSSTKSTAAAAVAAAAEAEAEAAEAENNAAEAEHDEAKEKEKGAQHRSNWLFCCPCWSFCS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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